Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.9e-87 325.1 155 100.0
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.8e-59 231.1 143 79.7
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-58 229.6 153 74.5
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 5.4e-49 198.0 138 69.6
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 7.1e-49 197.6 138 68.8
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 2.7e-48 195.7 137 69.3
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 2.7e-48 195.7 137 69.3
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 6.6e-47 191.0 127 70.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.1e-46 190.3 126 69.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 1.1e-46 190.3 126 69.0
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 4.3e-46 188.3 145 61.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 5.6e-46 188.0 137 66.4
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 5.6e-46 188.0 135 67.4
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.6e-45 186.4 127 67.7
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 2.1e-45 186.0 127 68.5
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 2.8e-45 185.7 137 65.7
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 8.1e-45 184.1 126 68.3
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.1e-44 183.7 127 66.9
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.4e-44 183.3 127 67.7
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.4e-44 183.3 127 68.5
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 2.4e-44 182.6 138 64.5
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 2.4e-44 182.6 135 66.7
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 6.9e-44 181.0 127 70.1
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 6.9e-44 181.0 143 62.2
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 9.0e-44 180.6 127 65.4
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 9.0e-44 180.6 127 66.9
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 1.2e-43 180.3 127 66.1
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 1.5e-43 179.9 138 63.0
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.6e-43 179.1 127 65.4
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.6e-43 179.1 138 65.2
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.4e-43 178.7 127 65.4
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.4e-43 178.7 133 66.2
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.4e-43 178.7 105 82.9
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 5.8e-43 177.9 127 65.4
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.8e-43 177.9 127 65.4
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 7.6e-43 177.6 127 65.4
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 9.9e-43 177.2 112 76.8
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 9.9e-43 177.2 136 64.7
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.3e-42 176.8 127 65.4
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.3e-42 176.8 126 65.9
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.7e-42 176.4 127 66.1
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.9e-42 175.6 127 65.4
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.9e-42 175.6 127 63.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 4.9e-42 174.9 133 65.4
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.4e-41 173.3 127 62.2
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.9e-41 172.9 127 62.2
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.4e-41 172.6 128 66.4
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.4e-41 172.6 128 66.4
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 2.4e-41 172.6 129 64.3
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.2e-41 172.2 127 64.6
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.2e-41 171.8 133 64.7
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 5.4e-41 171.4 128 61.7
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 5.4e-41 171.4 127 62.2
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.4e-41 171.4 136 61.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.4e-41 171.4 133 63.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 5.4e-41 171.4 127 64.6
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 9.3e-41 170.6 130 62.3
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 9.3e-41 170.6 133 64.7
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.1e-40 169.5 127 65.4
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 2.1e-40 169.5 145 59.3
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.7e-40 169.1 128 60.9
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.7e-40 169.1 127 61.4
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.7e-40 169.1 128 64.8
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.5e-40 168.7 128 64.1
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 4.6e-40 168.3 128 64.8
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 4.6e-40 168.3 126 64.3
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.6e-40 168.3 133 63.9
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 4.6e-40 168.3 127 61.4
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 4.6e-40 168.3 126 62.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 6.0e-40 167.9 129 62.8
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 6.0e-40 167.9 140 57.9
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 6.0e-40 167.9 122 65.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 6.0e-40 167.9 136 58.1
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 7.8e-40 167.5 120 66.7
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 7.8e-40 167.5 126 63.5
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.0e-39 167.2 128 61.7
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.3e-39 166.8 127 62.2
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.7e-39 166.4 127 60.6
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 3.0e-39 165.6 170 53.5
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 3.9e-39 165.2 128 63.3
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 5.1e-39 164.9 153 54.9
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 5.1e-39 164.9 124 61.3
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 6.6e-39 164.5 128 63.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 6.6e-39 164.5 128 63.3
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.1e-38 163.7 128 60.9
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.1e-38 163.7 128 60.9
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.5e-38 163.3 131 58.8
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.5e-38 163.3 126 62.7
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 2.5e-38 162.5 128 62.5
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 2.5e-38 162.5 140 57.1
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.3e-38 162.2 127 59.1
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.3e-38 162.2 126 59.5
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 3.3e-38 162.2 126 61.1
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 3.3e-38 162.2 120 62.5
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 5.6e-38 161.4 129 62.0
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.8e-37 159.1 127 56.7
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 3.6e-37 158.7 122 63.9
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 8.1e-37 157.5 137 60.6
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 3.1e-36 155.6 129 60.5
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 5.3e-36 154.8 126 57.1
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.2e-35 153.7 127 59.1
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.5e-35 153.3 124 62.1
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.0e-35 152.9 97 72.2
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 4.5e-35 151.8 127 59.8
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 4.5e-35 151.8 127 59.8
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.7e-34 149.8 127 59.1
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.7e-34 149.8 127 59.1
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.7e-34 149.8 127 59.1
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 2.9e-34 149.1 130 57.7
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 2.9e-34 149.1 223 42.2
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 4.9e-34 148.3 123 58.5
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 4.9e-34 148.3 134 53.7
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.4e-33 146.0 144 52.8
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 7.1e-33 144.4 138 56.5
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.2e-32 143.7 126 57.9
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 7.9e-32 141.0 127 52.8
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 5.1e-31 138.3 120 55.8
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.1e-28 130.6 93 64.5
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-28 130.2 77 77.9
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.4e-28 130.2 130 53.1
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.9e-26 122.5 134 47.0
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 6.5e-26 121.3 126 50.0
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 2.5e-25 119.4 126 48.4
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 7.1e-25 117.9 124 50.0
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 4.6e-24 115.2 121 44.6
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 3.9e-23 112.1 65 76.9
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 3.9e-23 112.1 127 42.5
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.5e-22 109.4 147 38.8
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 2.5e-22 109.4 126 42.9
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 2.6e-19 99.4 66 72.7
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 9.3e-17 90.9 54 74.1
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.8e-15 86.7 130 40.0
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.5e-14 83.6 70 58.6
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 9.0e-12 74.3 67 55.2
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.5e-11 73.6 76 51.3
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.7e-10 70.1 63 55.6
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 5.0e-10 68.6 71 52.1
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 2.1e-08 63.2 126 30.2


User provided reference genes

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