Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.5e-45 183.0 82 100.0
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.3e-29 131.0 63 90.5
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-28 129.4 63 88.9
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 6.9e-27 123.6 64 78.1
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.5e-26 122.5 64 76.6
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.6e-26 120.2 64 81.2
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 3.8e-25 117.9 64 78.1
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 6.4e-25 117.1 64 73.4
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 8.4e-25 116.7 64 73.4
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 7.1e-24 113.6 66 72.7
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 9.3e-24 113.2 63 71.4
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 9.3e-24 113.2 63 76.2
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 9.3e-24 113.2 63 76.2
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.3e-24 113.2 61 80.3
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.2e-23 112.8 64 71.9
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.2e-23 112.8 63 79.4
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.6e-23 112.5 63 73.0
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 2.7e-23 111.7 63 73.0
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 3.5e-23 111.3 63 69.8
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 4.6e-23 110.9 63 73.0
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.8e-22 109.0 63 73.0
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.8e-22 109.0 63 73.0
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 2.3e-22 108.6 74 64.9
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 2.3e-22 108.6 63 73.0
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.3e-22 108.6 64 70.3
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.9e-22 107.8 63 71.4
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.1e-22 107.5 66 69.7
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 5.1e-22 107.5 66 69.7
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 5.1e-22 107.5 63 68.3
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.7e-22 107.1 63 69.8
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 8.7e-22 106.7 73 61.6
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.1e-21 106.3 64 68.8
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.5e-21 105.9 66 68.2
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.5e-21 105.9 63 69.8
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.9e-21 105.5 63 69.8
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.9e-21 105.5 63 69.8
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.5e-21 105.1 63 68.3
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.5e-21 105.1 63 68.3
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.5e-21 105.1 61 72.1
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.5e-21 105.1 66 68.2
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.5e-21 105.1 66 68.2
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.5e-21 105.1 63 71.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 3.3e-21 104.8 63 71.4
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.3e-21 104.8 63 68.3
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.3e-21 104.8 63 68.3
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 4.3e-21 104.4 63 69.8
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 4.3e-21 104.4 63 69.8
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 4.3e-21 104.4 63 69.8
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.4e-21 103.6 63 69.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 7.4e-21 103.6 63 68.3
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 7.4e-21 103.6 63 68.3
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 7.4e-21 103.6 61 68.9
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 9.6e-21 103.2 63 66.7
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 9.6e-21 103.2 63 69.8
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 9.6e-21 103.2 63 68.3
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 9.6e-21 103.2 63 68.3
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 9.6e-21 103.2 66 66.7
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.6e-21 103.2 63 69.8
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 9.6e-21 103.2 62 67.7
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.6e-20 102.4 63 66.7
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.6e-20 102.4 63 66.7
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.6e-20 102.4 63 66.7
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.6e-20 102.4 63 66.7
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.1e-20 102.1 66 65.2
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.1e-20 102.1 63 68.3
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.8e-20 101.7 63 65.1
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.7e-20 101.3 63 66.7
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 3.7e-20 101.3 63 66.7
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 4.8e-20 100.9 63 63.5
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 4.8e-20 100.9 63 68.3
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 4.8e-20 100.9 63 66.7
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 4.8e-20 100.9 66 63.6
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 4.8e-20 100.9 63 66.7
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.8e-20 100.9 63 68.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 6.2e-20 100.5 63 68.3
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 6.2e-20 100.5 61 70.5
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 6.2e-20 100.5 61 70.5
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 6.2e-20 100.5 63 66.7
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.1e-19 99.8 63 65.1
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.1e-19 99.8 63 66.7
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.1e-19 99.8 64 64.1
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-19 99.4 63 65.1
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.4e-19 99.4 63 66.7
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.8e-19 99.0 61 68.9
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 2.4e-19 98.6 63 66.7
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.4e-19 98.6 59 69.5
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.4e-19 98.6 62 71.0
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 2.4e-19 98.6 63 63.5
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 3.1e-19 98.2 63 66.7
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 5.3e-19 97.4 63 60.3
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.5e-18 95.9 63 63.5
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.6e-18 95.1 66 62.1
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 2.6e-18 95.1 63 65.1
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.6e-18 95.1 63 60.3
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 3.4e-18 94.7 63 63.5
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.4e-18 94.7 66 62.1
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 3.4e-18 94.7 63 68.3
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 5.8e-18 94.0 63 61.9
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 5.8e-18 94.0 63 61.9
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 7.6e-18 93.6 63 61.9
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 1.0e-17 93.2 63 61.9
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-17 93.2 78 62.8
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.3e-17 92.8 66 60.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.7e-17 92.4 63 61.9
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.7e-17 92.4 59 67.8
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.9e-17 91.7 59 64.4
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 2.9e-17 91.7 64 59.4
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 3.8e-17 91.3 63 58.7
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 4.9e-17 90.9 63 61.9
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 4.9e-17 90.9 66 62.1
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 6.5e-17 90.5 66 59.1
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 6.5e-17 90.5 63 58.7
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.4e-16 89.4 63 60.3
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.9e-16 89.0 63 60.3
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.6e-15 85.9 63 58.7
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 1.6e-15 85.9 63 61.9
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.7e-15 85.1 63 60.3
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 3.5e-15 84.7 61 62.3
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.9e-15 83.6 49 79.6
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-14 82.4 49 77.6
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 8.7e-14 80.1 63 60.3
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.9e-13 79.0 63 52.4
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 3.3e-13 78.2 63 58.7
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 2.1e-12 75.5 63 50.8
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 3.7e-12 74.7 63 49.2
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.2e-12 73.6 65 44.6
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.2e-12 73.6 65 44.6
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.4e-11 72.8 82 39.0
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.9e-08 62.4 41 63.4
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 3.2e-08 61.6 68 39.7
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 7.1e-08 60.5 47 55.3
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 9.3e-08 60.1 42 61.9
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 9.3e-08 60.1 42 61.9
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.3e-08 60.1 44 70.5
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.5e-07 58.2 66 45.5
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 7.9e-07 57.0 42 50.0
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.3e-06 55.5 33 69.7
GSVIVG01027277001 Vitis vinifera HOM05D038995 ORTHO05D005199 5.1e-06 54.3 27 88.9
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 6.7e-06 53.9 42 52.4


User provided reference genes

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