Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026030001 Vitis vinifera HOM05D001401 ORTHO05D002222 5.2e-19 96.7 47 100.0
GSVIVG01026038001 Vitis vinifera HOM05D001401 ORTHO05D002222 2.6e-18 94.4 47 97.9
GSVIVG01026045001 Vitis vinifera HOM05D001401 ORTHO05D002222 1.1e-16 89.0 47 91.5
GSVIVG01032884001 Vitis vinifera HOM05D001401 ORTHO05D002222 5.3e-16 86.7 46 89.1
GSVIVG01031900001 Vitis vinifera HOM05D001401 ORTHO05D002222 4.5e-15 83.6 43 90.7
Prupe.8G107300 Prunus persica HOM05D001401 ORTHO05D002222 8.5e-14 79.3 44 81.8
Potri.009G110800 Populus trichocarpa HOM05D001401 ORTHO05D002222 3.2e-13 77.4 43 79.1
MD00G1018700 Malus domestica HOM05D001401 ORTHO05D002222 5.5e-13 76.6 43 79.1
RcHm_v2.0_Chr6g0262171 Rosa chinensis HOM05D001401 ORTHO05D002222 5.5e-13 76.6 43 79.1
MD10G1083900 Malus domestica HOM05D001401 ORTHO05D002222 9.4e-13 75.9 43 79.1
FAN27G1882 Fragaria x ananassa HOM05D001401 ORTHO05D002222 1.2e-12 75.5 43 79.1
Nitab4.5_0012731g0010 Nicotiana tabacum HOM05D001401 ORTHO05D002222 1.2e-12 75.5 44 75.0
Ciclev10023045m.g Citrus clementina HOM05D001401 ORTHO05D002222 1.6e-12 75.1 43 76.7
Haze_02445 Corylus avellana HOM05D001401 ORTHO05D002222 1.6e-12 75.1 42 78.6
FvH4_2g07770 Fragaria vesca HOM05D001401 ORTHO05D002222 1.6e-12 75.1 43 79.1
FAN15G0301 Fragaria x ananassa HOM05D001401 ORTHO05D002222 1.6e-12 75.1 43 79.1
FAN20G1633 Fragaria x ananassa HOM05D001401 ORTHO05D002222 1.6e-12 75.1 43 79.1
Haze_02431 Corylus avellana HOM05D001401 ORTHO05D002222 2.1e-12 74.7 42 78.6
Nitab4.5_0000215g0010 Nicotiana tabacum HOM05D001401 ORTHO05D002222 2.1e-12 74.7 44 75.0
QL11p037830 Quercus lobata HOM05D001401 ORTHO05D002222 2.1e-12 74.7 43 79.1
QL11p040043 Quercus lobata HOM05D001401 ORTHO05D002222 2.1e-12 74.7 43 79.1
Actinidia17833 Actinidia chinensis HOM05D001401 ORTHO05D002222 2.7e-12 74.3 44 72.7
Ciclev10027538m.g Citrus clementina HOM05D001401 ORTHO05D002222 2.7e-12 74.3 44 75.0
FAN24G1995 Fragaria x ananassa HOM05D001401 ORTHO05D002222 2.7e-12 74.3 43 79.1
MD00G1018800 Malus domestica HOM05D001401 ORTHO05D002222 2.7e-12 74.3 43 76.7
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 3.6e-12 73.9 42 76.2
CiPaw.05G060000 Carya illinoinensis HOM05D001401 ORTHO05D002222 3.6e-12 73.9 43 74.4
COL.COLO4_17795 Corchorus olitorius HOM05D001401 ORTHO05D002222 4.7e-12 73.6 44 72.7
Lj5A202T44 Lonicera japonica HOM05D001401 ORTHO05D002222 4.7e-12 73.6 43 74.4
TPR.G28090 Trifolium pratense HOM05D001401 ORTHO05D002222 4.7e-12 73.6 43 74.4
Ciclev10029451m.g Citrus clementina HOM05D001401 ORTHO05D002222 6.1e-12 73.2 43 74.4
Cc02_g18030 Coffea canephora HOM05D001401 ORTHO05D002222 6.1e-12 73.2 43 74.4
Lj3g0017143 Lotus japonicus HOM05D001401 ORTHO05D002222 6.1e-12 73.2 43 74.4
Sabra09G0084500 Salix brachista HOM05D001401 ORTHO05D002222 6.1e-12 73.2 43 74.4
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 6.1e-12 73.2 45 77.8
Cpa.g.sc62.96 Carica papaya HOM05D001401 ORTHO05D002222 8.0e-12 72.8 43 74.4
Dinv23565 Davidia involucrata HOM05D001401 ORTHO05D002222 8.0e-12 72.8 43 74.4
Duzib052G0198 Durio zibethinus HOM05D001401 ORTHO05D002222 1.0e-11 72.4 43 72.1
Eucgr.I01236 Eucalyptus grandis HOM05D001401 ORTHO05D002222 1.0e-11 72.4 42 73.8
Manes.17G098200 Manihot esculenta HOM05D001401 ORTHO05D002222 1.0e-11 72.4 43 72.1
Actinidia27916 Actinidia chinensis HOM05D001401 ORTHO05D002222 1.4e-11 72.0 43 74.4
Lalb_Chr01g0002841 Lupinus albus HOM05D001401 ORTHO05D002222 1.4e-11 72.0 43 74.4
Medtr4g068860 Medicago truncatula HOM05D001401 ORTHO05D002222 1.4e-11 72.0 43 74.4
Gohir.A04G129000 Gossypium hirsutum HOM05D001401 ORTHO05D002222 1.8e-11 71.6 43 72.1
Gohir.D04G174100 Gossypium hirsutum HOM05D001401 ORTHO05D002222 1.8e-11 71.6 43 72.1
Gorai.012G163500 Gossypium raimondii HOM05D001401 ORTHO05D002222 1.8e-11 71.6 43 72.1
Gorai.012G163700 Gossypium raimondii HOM05D001401 ORTHO05D002222 1.8e-11 71.6 43 72.1
PGSC0003DMG400030927 Solanum tuberosum HOM05D001401 ORTHO05D002222 1.8e-11 71.6 44 70.5
Actinidia17830 Actinidia chinensis HOM05D001401 ORTHO05D002222 3.0e-11 70.9 43 72.1
arahy.Tifrunner.gnm1.ann1.SJG3D7 Arachis hypogaea HOM05D001401 ORTHO05D002222 3.0e-11 70.9 43 72.1
MSTRG.20114 Avicennia marina HOM05D001401 ORTHO05D002222 3.0e-11 70.9 43 72.1
COL.COLO4_17796 Corchorus olitorius HOM05D001401 ORTHO05D002222 3.0e-11 70.9 43 72.1
Duzib052G0459 Durio zibethinus HOM05D000554 ORTHO05D002829 3.0e-11 70.9 43 72.1
SGA_v2.0_scaffold32G13140 Striga asiatica HOM05D001401 ORTHO05D002222 3.0e-11 70.9 43 74.4
VMungo1127G1474 Vigna mungo HOM05D001401 ORTHO05D002222 3.0e-11 70.9 43 69.8
Ciclev10029240m.g Citrus clementina HOM05D001401 ORTHO05D002222 4.0e-11 70.5 43 72.1
CsaV3_2G014490 Cucumis sativus L. HOM05D001401 ORTHO05D002222 4.0e-11 70.5 43 69.8
Peaxi162Scf00684g00554 Petunia axillaris HOM05D001401 ORTHO05D002222 4.0e-11 70.5 44 68.2
PGR142G4394 Punica granatum HOM05D001401 ORTHO05D002222 4.0e-11 70.5 43 72.1
Thecc.02G031100 Theobroma cacao HOM05D001401 ORTHO05D002222 4.0e-11 70.5 43 72.1
Glyma.11G121800 Glycine max HOM05D001401 ORTHO05D002222 5.2e-11 70.1 43 69.8
Thecc.02G031000 Theobroma cacao HOM05D001401 ORTHO05D002222 5.2e-11 70.1 43 72.1
Atru.chr5.2916 Acer truncatum HOM05D001401 ORTHO05D002222 6.8e-11 69.7 43 72.1
CANSAT25G0021 Cannabis sativa HOM05D001401 ORTHO05D002222 6.8e-11 69.7 43 67.4
Migut.N01217 Erythranthe guttata HOM05D001401 ORTHO05D002222 6.8e-11 69.7 43 69.8
Sp3g29330 Schrenkiella parvula HOM05D001401 ORTHO05D002222 6.8e-11 69.7 43 67.4
Aa31LG8G13510 Aethionema arabicum HOM05D001401 ORTHO05D002222 8.8e-11 69.3 43 69.8
Sed0006680 Sechium edule HOM05D001401 ORTHO05D002222 8.8e-11 69.3 43 67.4
Solyc07g008240.3 Solanum lycopersicum HOM05D001401 ORTHO05D002222 8.8e-11 69.3 44 68.2
Sopen07g004120 Solanum pennellii HOM05D001401 ORTHO05D002222 8.8e-11 69.3 44 68.2
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 8.8e-11 69.3 43 67.4
CAN.G573.4 Capsicum annuum HOM05D001401 ORTHO05D002222 1.2e-10 68.9 44 68.2
AUR62011381 Chenopodium quinoa HOM05D001401 ORTHO05D002222 1.2e-10 68.9 43 69.8
AUR62016678 Chenopodium quinoa HOM05D001401 ORTHO05D002222 1.2e-10 68.9 43 69.8
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 1.2e-10 68.9 43 67.4
Manes.17G098301 Manihot esculenta HOM05D001401 ORTHO05D002222 1.2e-10 68.9 43 67.4
Medtr4g068870 Medicago truncatula HOM05D001401 ORTHO05D002222 1.2e-10 68.9 44 68.2
SalBow6G4677 Salvia bowleyana HOM05D001401 ORTHO05D002222 1.2e-10 68.9 43 72.1
Migut.B00280 Erythranthe guttata HOM05D001401 ORTHO05D002222 1.5e-10 68.6 43 69.8
Oeu034082.1 Olea europaea HOM05D001401 ORTHO05D002222 1.5e-10 68.6 43 67.4
Rhsim05G0077800 Rhododendron simsii HOM05D001401 ORTHO05D002222 1.5e-10 68.6 43 67.4
Carub.0003s2987 Capsella rubella HOM05D001401 ORTHO05D002222 2.0e-10 68.2 43 69.8
CARHR106350 Cardamine hirsuta HOM05D001401 ORTHO05D002222 2.0e-10 68.2 43 67.4
Oeu034081.1 Olea europaea HOM05D001401 ORTHO05D002222 2.0e-10 68.2 43 69.8
SGA_v2.0_scaffold58G20584 Striga asiatica HOM05D001401 ORTHO05D002222 2.6e-10 67.8 43 72.1
TPR.G28093 Trifolium pratense HOM05D001401 ORTHO05D002222 2.6e-10 67.8 43 69.8
Ah.01g019710 Amaranthus hybridus HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
BcaC06g36108 Brassica carinata HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
BcaC06g36110 Brassica carinata HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
C07p07680 Brassica napus HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
BolC7t41189H Brassica oleracea HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
CARHR106360 Cardamine hirsuta HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
AUR62011380 Chenopodium quinoa HOM05D001401 ORTHO05D002222 3.4e-10 67.4 41 73.2
AUR62016679 Chenopodium quinoa HOM05D001401 ORTHO05D002222 3.4e-10 67.4 41 73.2
ClCG09G017870 Citrullus lanatus HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 67.4
vmacro19444 Vaccinium macrocarpon HOM05D001401 ORTHO05D002222 3.4e-10 67.4 43 65.1
BcaC06g36109 Brassica carinata HOM05D001401 ORTHO05D002222 4.4e-10 67.0 43 67.4
BcaC06g36112 Brassica carinata HOM05D001401 ORTHO05D002222 4.4e-10 67.0 43 67.4
A07p04780 Brassica napus HOM05D001401 ORTHO05D002222 4.4e-10 67.0 43 67.4
C07p07670 Brassica napus HOM05D001401 ORTHO05D002222 4.4e-10 67.0 43 67.4
BolC7t41188H Brassica oleracea HOM05D001401 ORTHO05D002222 4.4e-10 67.0 43 67.4
BraA07t28265Z Brassica rapa HOM05D001401 ORTHO05D002222 4.4e-10 67.0 43 67.4
Lj3g0010114 Lotus japonicus HOM05D001401 ORTHO05D002222 4.4e-10 67.0 44 65.9
SEGI_27965 Sequoiadendron giganteum HOM05D001401 ORTHO05D002222 4.4e-10 67.0 41 68.3
AT2G16060 Arabidopsis thaliana HOM05D001401 ORTHO05D002222 5.7e-10 66.6 43 67.4
Phvul.011G048600 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 5.7e-10 66.6 43 67.4
PGR042G3085 Punica granatum HOM05D001401 ORTHO05D002222 5.7e-10 66.6 43 65.1
CSS0023475 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D002222 7.5e-10 66.2 43 65.1
DCAR_022087 Daucus carota HOM05D001401 ORTHO05D002222 7.5e-10 66.2 43 65.1
Atru.chr5.2915 Acer truncatum HOM05D001401 ORTHO05D002222 9.8e-10 65.9 43 67.4
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 9.8e-10 65.9 41 70.7
Medtr0026s0210 Medicago truncatula HOM05D001401 ORTHO05D002222 9.8e-10 65.9 42 66.7
Phvul.011G048700 Phaseolus vulgaris HOM05D001401 ORTHO05D002222 9.8e-10 65.9 43 67.4
ClCG00G006680 Citrullus lanatus HOM05D001401 ORTHO05D002222 1.3e-09 65.5 41 68.3
DCAR_028135 Daucus carota HOM05D001401 ORTHO05D002222 1.7e-09 65.1 43 60.5
Hund06212 Selenicereus undatus HOM05D001401 ORTHO05D002222 1.7e-09 65.1 43 62.8
TAR628G1375 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.7e-09 65.1 43 62.8
GSVIVG01031901001 Vitis vinifera HOM05D001401 ORTHO05D002222 1.7e-09 65.1 43 65.1
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 4.8e-09 63.5 42 64.3
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 4.8e-09 63.5 44 63.6
Os03g0226200 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D002222 4.8e-09 63.5 44 68.2
Os03g0234000 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D002222 6.3e-09 63.2 44 68.2
Sc05g0005420 Simmondsia chinensis HOM05D001401 ORTHO05D002222 8.3e-09 62.8 42 66.7
ATR0733G211 Amborella trichopoda HOM05D001401 ORTHO05D002222 1.1e-08 62.4 44 56.8
Eucgr.I01237 Eucalyptus grandis HOM05D001401 ORTHO05D002222 1.1e-08 62.4 43 62.8
Thhalv10022889m.g Eutrema salsugineum HOM05D001401 ORTHO05D002222 1.1e-08 62.4 43 62.8
THA.LOC104808450 Tarenaya hassleriana HOM05D001401 ORTHO05D002222 2.4e-08 61.2 43 65.1
Lalb_Chr01g0002851 Lupinus albus HOM05D001401 ORTHO05D002222 3.1e-08 60.8 43 60.5
unitig_0.g72 Utricularia gibba HOM05D001401 ORTHO05D002222 4.1e-08 60.5 44 61.4
Zm00001eb399590 Zea mays HOM05D001401 ORTHO05D002222 7.0e-08 59.7 45 62.2
Os03g0234100 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D002222 9.1e-08 59.3 44 59.1
Os05g0517600 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D002222 1.2e-07 58.9 43 58.1
Os03g0233900 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D002222 2.0e-07 58.2 44 63.6
Zm00001eb293010 Zea mays HOM05D001401 ORTHO05D002222 3.5e-07 57.4 43 53.5
Atru.chr5.2918 Acer truncatum HOM05D001401 ORTHO05D002222 4.5e-07 57.0 39 64.1
Atru.chr12.935 Acer truncatum HOM05D001401 ORTHO05D002222 1.7e-06 55.1 41 65.9
arahy.Tifrunner.gnm1.ann1.H8G850 Arachis hypogaea HOM05D001401 ORTHO05D002222 2.2e-06 54.7 43 58.1
Aqoxy7G03039 Aquilegia oxysepala HOM05D001401 ORTHO05D002222 3.8e-06 53.9 41 61.0
Nn2g13892 Nelumbo nucifera HOM05D001401 ORTHO05D002222 3.8e-06 53.9 41 61.0
QL08p052977 Quercus lobata HOM05D001401 ORTHO05D002222 5.0e-06 53.5 43 60.5
CSS0013753 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D002222 8.5e-06 52.8 41 56.1
Lalb_Chr21g0313081 Lupinus albus HOM05D001401 ORTHO05D002222 8.5e-06 52.8 41 56.1


User provided reference genes

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