Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 2978.0 1686 100.0
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1468.0 1708 54.7
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1468.0 1708 54.7
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1412.9 1713 52.4
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1388.2 1692 51.5
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1356.3 1837 49.5
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 1345.1 1689 50.0
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1340.9 1707 50.6
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1305.4 1692 48.5
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 1256.5 1746 49.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1248.0 1727 50.4
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 1246.1 1763 47.2
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 1206.0 1726 46.7
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1204.1 1725 46.7
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1181.4 1704 44.9
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1176.0 1599 49.5
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1168.7 1676 46.4
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1140.9 1679 45.3
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 0.0e+00 1138.6 1750 44.3
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 0.0e+00 1138.3 1716 46.7
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 0.0e+00 1129.0 1791 43.6
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 1097.8 1715 43.1
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 0.0e+00 1087.8 1732 43.2
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 0.0e+00 1080.9 1756 43.2
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 6.7e-310 1068.1 1776 44.4
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.9e-299 1031.6 1735 42.0
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 3.4e-298 1029.2 1217 52.3
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.4e-296 1023.8 1841 40.6
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 6.3e-292 1008.4 1690 41.9
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 2.4e-291 1006.5 1695 43.7
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 6.9e-291 1005.0 2073 38.0
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 4.5e-290 1002.3 1681 41.9
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 5.0e-289 998.8 1821 42.4
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.2e-282 977.6 1726 42.1
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.3e-276 957.6 1710 40.8
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 3.1e-275 953.0 1703 40.6
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 3.5e-274 949.5 1805 41.3
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.9e-273 946.4 1849 38.9
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 2.9e-273 946.4 1687 43.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.6e-263 914.1 1659 40.1
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 3.4e-261 906.4 1703 41.5
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 1.1e-259 901.4 1680 40.3
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 4.1e-259 899.4 1782 38.2
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 7.0e-259 898.7 1716 39.8
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 3.5e-258 896.3 1775 39.0
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 7.7e-258 895.2 1759 38.0
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.9e-257 893.3 1769 38.8
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 9.5e-256 888.3 1667 39.9
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.3e-254 883.6 1727 39.8
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 3.4e-253 879.8 1800 37.4
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.3e-252 877.9 1744 40.6
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 2.4e-251 873.6 1693 38.9
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 3.5e-250 869.8 1729 39.4
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 3.9e-249 866.3 1750 38.1
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.2e-247 861.3 1740 39.4
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 1.4e-246 857.8 1673 39.5
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 3.1e-246 856.7 1686 39.1
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 2.6e-245 853.6 1722 38.4
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 4.4e-245 852.8 1664 38.9
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 5.4e-243 845.9 1684 37.2
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 3.0e-241 840.1 1645 37.6
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 8.6e-241 838.6 1626 39.6
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 6.8e-238 828.9 1694 38.2
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.7e-236 824.3 1750 39.5
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 1.0e-233 815.1 1703 37.9
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 7.3e-232 808.9 1550 39.0
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 7.6e-229 798.9 1668 39.4
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 9.6e-224 781.9 1736 36.8
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 6.2e-223 779.2 1747 39.4
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.6e-218 764.6 1780 38.6
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 3.0e-217 760.4 1153 42.2
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 4.8e-215 753.1 1648 36.3
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 8.1e-215 752.3 1629 39.3
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 1.2e-210 738.4 1766 40.4
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 4.8e-207 726.5 1645 35.6
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 5.3e-206 723.0 1630 36.0
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 2.6e-205 720.7 1489 38.9
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 4.5e-197 693.3 939 45.5
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 3.2e-195 687.2 1736 33.9
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.2e-183 647.9 1659 33.7
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 9.7e-168 595.9 1662 32.4
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 2.4e-166 591.3 1406 36.6
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 4.7e-162 577.0 982 43.0
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.7e-161 573.2 779 45.8
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.5e-157 560.8 1416 34.5
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.5e-157 560.8 1416 34.5
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 6.3e-151 540.0 940 42.4
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 5.5e-147 526.9 1652 30.6
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 4.4e-144 517.3 884 39.1
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.1e-139 502.7 883 39.9
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.9e-139 501.9 802 41.4
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.5e-133 481.1 876 40.6
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 4.6e-109 401.0 914 40.0
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.1e-107 396.4 432 47.5
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 7.1e-102 377.1 829 40.5
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 7.9e-93 347.1 646 45.4
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 6.7e-92 344.0 1099 28.5
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 3.3e-91 341.7 1050 29.3
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 6.2e-90 337.4 879 37.7
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.4e-86 326.2 643 36.7
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 2.5e-83 315.5 777 36.4
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.4e-81 309.7 627 36.0
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 4.9e-79 301.2 464 43.3
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 6.7e-76 290.8 465 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.0e-71 276.9 1068 27.2
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 2.9e-71 275.4 1676 24.0
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 9.7e-67 260.4 1018 31.2
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.8e-66 258.8 477 42.1
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.8e-60 239.6 237 52.7
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.4e-57 229.9 656 35.8
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 3.1e-57 228.8 858 33.6
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 4.1e-57 228.4 167 71.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.9e-55 222.2 625 34.9
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 2.9e-55 222.2 232 51.7
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.5e-54 219.2 232 49.6
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 5.2e-52 211.5 234 53.8
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.0e-51 209.5 234 53.8
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.6e-48 199.9 146 60.3
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 2.7e-45 189.1 183 54.1
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.4e-44 186.8 195 53.8
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 1.3e-42 180.3 443 36.6
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 5.5e-38 164.9 280 43.2
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 3.4e-35 155.6 94 73.4
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 8.3e-34 151.0 136 64.7
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.2e-32 147.1 194 45.4
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 7.2e-30 137.9 367 33.8
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.0e-28 134.0 189 41.3
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.4e-28 133.7 140 45.7
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-27 129.8 219 38.8
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.2e-24 120.6 133 51.9
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 3.8e-23 115.5 813 26.2
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 7.3e-22 111.3 358 33.0
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 9.5e-22 110.9 80 66.2
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.1e-21 109.8 787 31.9
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 6.8e-20 104.8 113 61.1
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 8.3e-18 97.8 117 40.2
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.4e-17 97.1 75 65.3
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.6e-16 93.6 152 35.5
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.6e-16 93.6 68 60.3
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 2.0e-16 93.2 75 64.0
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.0e-15 90.9 70 64.3
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.3e-14 85.5 85 55.3
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 9.5e-14 84.3 305 27.5
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 8.0e-13 81.3 290 29.3
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 2.1e-08 66.6 55 65.5
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 6.0e-08 65.1 249 30.1
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.8e-08 64.7 47 57.4
Gohir.A07G008001 Gossypium hirsutum HOM05D036473 ORTHO05D036031 2.3e-07 63.2 95 36.8
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 6.6e-07 61.6 90 37.8


User provided reference genes

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