Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 0.0e+00 1352.8 673 100.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 5.5e-311 1070.5 665 80.8
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 3.1e-306 1054.7 661 79.9
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.1e-303 1046.2 661 78.8
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.4e-303 1045.8 661 78.8
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.6e-302 1042.3 662 78.7
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 6.6e-301 1036.9 582 85.6
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.5e-300 1035.0 602 84.1
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 5.6e-300 1033.9 654 78.1
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 7.3e-300 1033.5 663 78.7
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.1e-299 1031.9 579 85.5
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 6.2e-299 1030.4 581 84.9
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 8.0e-299 1030.0 591 84.3
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.3e-298 1028.5 618 81.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 3.1e-298 1028.1 623 80.7
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 3.1e-298 1028.1 683 76.9
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 4.0e-298 1027.7 624 80.8
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 6.8e-298 1026.9 674 77.3
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 8.9e-298 1026.5 663 77.2
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.5e-297 1025.8 704 74.0
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 2.0e-297 1025.4 624 79.8
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 2.0e-297 1025.4 565 86.4
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.6e-297 1025.0 629 80.6
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 5.8e-297 1023.8 582 84.7
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 5.8e-297 1023.8 662 77.5
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 9.8e-297 1023.1 656 77.9
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.3e-296 1022.7 631 80.0
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 6.4e-296 1020.4 612 80.4
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.1e-295 1019.6 613 79.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 2.4e-295 1018.5 618 80.1
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.2e-295 1018.1 633 79.9
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 3.2e-295 1018.1 655 77.7
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.1e-295 1017.7 655 77.9
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.6e-294 1015.8 660 77.7
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.1e-294 1015.4 663 76.9
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.7e-294 1015.0 629 79.8
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.3e-293 1012.7 586 83.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.3e-293 1011.9 651 76.5
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.0e-293 1011.5 633 78.7
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 3.0e-293 1011.5 633 78.5
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 5.1e-293 1010.7 585 83.1
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.3e-292 1007.7 665 76.5
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 7.3e-292 1006.9 652 75.9
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 9.5e-292 1006.5 622 78.0
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.6e-291 1004.6 572 83.0
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 6.2e-291 1003.8 586 81.7
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.4e-290 1002.7 643 76.0
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.4e-290 1002.7 585 81.4
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.8e-290 1002.3 661 75.9
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 4.0e-290 1001.1 659 75.9
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 6.8e-290 1000.3 656 75.6
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 6.8e-290 1000.3 648 76.2
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.6e-289 998.4 609 79.5
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.4e-289 998.0 584 82.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.5e-289 996.9 584 82.5
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 9.9e-289 996.5 631 76.9
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.3e-288 996.1 572 82.9
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 8.3e-288 993.4 644 76.9
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.4e-287 992.6 569 82.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.4e-287 992.6 575 81.6
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 2.4e-287 991.9 575 81.4
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 4.1e-287 991.1 584 82.0
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 4.1e-287 991.1 620 77.3
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.6e-286 989.2 569 82.1
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.6e-286 989.2 625 76.8
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 2.7e-286 988.4 613 78.1
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 4.6e-286 987.6 619 76.9
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 6.0e-286 987.3 638 75.9
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 6.0e-286 987.3 599 78.5
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 7.8e-286 986.9 545 85.5
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.0e-285 986.5 627 76.4
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.0e-285 986.5 582 81.6
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 1.3e-285 986.1 585 80.2
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 5.1e-285 984.2 633 76.5
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 6.6e-285 983.8 630 75.9
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 8.6e-285 983.4 563 82.4
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.9e-284 982.2 585 79.5
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 3.3e-284 981.5 543 85.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 7.3e-284 980.3 629 75.5
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 2.1e-283 978.8 752 68.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.1e-283 978.8 528 88.1
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 3.6e-283 978.0 609 77.2
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 4.7e-283 977.6 631 75.4
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 6.2e-283 977.2 616 76.1
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.6e-281 971.8 634 74.8
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 5.8e-281 970.7 609 78.3
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 9.9e-281 969.9 578 79.1
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 4.9e-280 967.6 634 74.6
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.4e-279 966.1 607 76.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.4e-279 965.3 560 80.5
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 5.4e-279 964.1 545 82.2
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.6e-278 962.6 635 77.5
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.7e-278 961.8 653 73.2
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 6.0e-278 960.7 638 74.0
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.3e-277 959.5 638 73.8
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.3e-277 959.5 579 79.4
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 3.0e-277 958.4 543 83.1
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.5e-276 956.1 653 72.7
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 2.1e-275 952.2 629 73.1
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 4.0e-274 948.0 583 77.7
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 4.0e-274 948.0 531 83.2
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.4e-271 938.7 628 73.9
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 9.3e-271 936.8 625 74.2
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 3.5e-270 934.9 625 74.1
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 4.6e-270 934.5 616 74.2
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 3.0e-269 931.8 669 70.0
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 8.7e-269 930.2 633 72.7
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.4e-266 922.2 532 81.6
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 2.2e-264 915.6 565 77.7
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 2.2e-256 889.0 630 70.0
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 6.4e-256 887.5 576 75.2
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 4.6e-254 881.3 649 68.0
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.2e-251 870.9 640 71.1
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.2e-249 866.7 530 80.6
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.8e-242 842.8 609 70.3
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 5.3e-242 841.3 448 88.6
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-241 839.7 448 89.5
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.5e-239 832.4 548 75.9
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.2e-238 830.1 547 70.9
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.4e-234 816.6 439 88.4
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 3.4e-233 812.0 548 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.2e-230 803.5 612 65.5
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 8.0e-214 747.7 517 71.0
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.2e-211 739.6 573 69.3
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 3.4e-196 689.1 451 73.6
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 3.0e-184 649.4 538 59.1
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 2.3e-181 639.8 361 83.4
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.4e-173 614.0 344 85.5
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.6e-169 600.5 577 57.5
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 3.5e-153 546.2 362 75.1
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 1.2e-148 531.2 544 55.1
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 6.4e-147 525.4 417 65.5
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.1e-146 524.6 562 48.8
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 4.2e-146 522.7 278 89.6
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 4.0e-141 506.1 280 84.3
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 9.3e-138 495.0 299 80.9
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.3e-117 426.0 574 43.4
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 2.0e-111 407.5 288 67.4
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.0e-96 358.6 643 36.1
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 7.7e-92 342.4 184 87.0
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 6.5e-91 339.3 263 67.7
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.0e-87 327.8 179 88.3
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.6e-87 327.4 179 87.2
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.7e-83 314.7 188 76.6
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-82 311.6 167 89.2
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 3.3e-82 310.5 593 35.9
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 6.1e-81 306.2 499 37.9
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 6.6e-75 286.2 585 33.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.2e-70 271.2 321 48.6
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.7e-68 264.2 140 90.0
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 7.8e-68 262.7 609 33.0
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 6.4e-62 243.0 595 31.3
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 2.4e-61 241.1 159 69.8
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.1e-52 211.5 117 85.5
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 7.8e-52 209.5 120 85.0
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 4.2e-45 187.2 100 88.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 4.2e-45 187.2 107 82.2
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-43 181.8 115 76.5
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 9.0e-40 169.5 155 57.4
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.0e-36 156.8 111 70.3
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.1e-29 136.0 77 79.2
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.2e-28 132.5 67 86.6
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.7e-28 131.3 65 92.3
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 4.6e-28 130.6 90 70.0
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.8e-27 128.6 139 49.6
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 3.5e-20 104.4 64 78.1
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.0e-11 76.3 54 68.5
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.8e-11 75.5 78 56.4
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 2.2e-09 68.6 66 56.1
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.7e-09 67.8 57 59.6
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.4e-08 65.9 38 71.1
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 2.9e-06 58.2 64 46.9


User provided reference genes

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