Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 3799.2 1959 100.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2659.0 2023 68.9
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2500.3 2002 66.5
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2482.6 2089 63.6
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2478.0 2018 64.5
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2435.2 2029 64.0
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2430.2 2003 64.0
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2401.3 2006 63.9
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2393.2 2029 62.7
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2369.3 2030 62.6
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2365.9 2007 62.9
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2362.4 2003 62.2
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2359.7 2008 61.7
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2350.9 2001 62.1
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2336.2 2009 61.7
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2330.8 2015 62.3
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2321.2 2004 61.2
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2305.0 2001 62.5
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2274.6 2015 61.0
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2271.9 2016 61.0
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2268.4 2017 60.9
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2260.0 2005 60.6
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2259.2 2004 60.1
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2250.7 2090 58.7
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2201.8 2226 55.3
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 2170.6 1995 58.4
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 2140.2 2068 56.3
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2136.7 2024 57.7
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2135.9 2007 58.1
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2132.1 2024 57.6
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2130.5 2002 58.2
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 2128.2 1983 57.6
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2108.2 1817 61.4
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2106.6 1992 57.3
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2100.1 1994 57.6
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2090.1 2007 57.1
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 2077.8 2017 56.5
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 2073.1 1993 56.4
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2072.0 2005 57.4
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2068.5 2073 55.4
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 2068.1 2040 55.1
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2062.0 2023 55.0
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2060.4 2002 56.0
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2033.5 2006 55.0
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2011.5 2002 54.8
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2010.7 2082 54.1
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 2002.6 2015 54.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1987.2 2039 54.4
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1983.0 1990 53.9
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1961.0 1982 54.3
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1958.0 2028 53.6
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1927.5 1994 52.9
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1927.5 1982 54.6
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1927.1 2135 51.1
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1921.0 1996 53.2
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1914.4 1998 52.7
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1911.0 2206 49.3
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1908.6 1996 52.6
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1908.3 2058 52.1
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1907.1 1998 52.5
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1907.1 1989 51.9
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1904.0 2001 52.4
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1896.7 1998 52.4
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1891.7 2001 52.2
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1889.4 1992 52.5
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1881.3 1980 53.8
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1880.9 1990 53.0
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1879.0 2008 51.9
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1845.9 2016 50.8
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1827.4 1868 53.5
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1822.0 2029 50.9
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1806.6 1761 55.8
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1771.5 2046 49.9
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1764.6 1953 50.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1640.6 2024 46.0
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1559.7 1994 46.8
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1490.7 1277 63.0
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1489.6 1420 57.9
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1484.2 1533 55.3
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1481.1 1416 58.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1471.4 1422 57.4
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1414.1 2358 39.9
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1200.7 1988 39.2
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1156.0 1232 51.8
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 1078.5 1222 49.9
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 8.3e-288 995.0 1095 50.0
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 5.8e-281 972.2 1012 52.6
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 5.8e-281 972.2 2101 31.6
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.5e-276 957.6 2107 31.9
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 2.7e-262 910.2 603 74.6
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.5e-255 887.1 652 69.6
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.4e-250 871.3 806 57.6
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 3.5e-246 856.7 2097 29.6
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 5.3e-234 816.2 738 59.9
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.3e-218 763.1 795 52.8
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 8.0e-214 749.2 1523 33.2
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 7.0e-210 736.1 1295 38.1
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 7.3e-199 699.5 736 51.1
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 8.0e-198 696.0 891 43.8
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 2.5e-191 674.5 475 69.7
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 1.2e-169 602.4 738 48.1
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 3.5e-169 600.9 736 45.0
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.1e-167 595.9 726 47.5
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.7e-163 582.0 508 61.8
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.7e-161 574.7 793 46.0
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 2.9e-139 501.5 2224 23.7
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 5.0e-131 474.2 500 49.8
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 3.2e-130 471.5 336 66.7
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.1e-119 436.4 418 58.4
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 2.6e-119 435.3 390 59.7
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 2.5e-114 418.7 596 43.6
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 9.7e-111 406.8 652 39.4
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.3e-109 401.0 739 36.7
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.7e-97 362.1 638 36.2
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.4e-85 322.4 201 77.1
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 9.5e-82 310.5 232 64.7
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 3.4e-63 248.8 208 59.1
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 7.5e-63 247.7 190 65.3
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.3e-58 231.1 411 37.2
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.0e-51 210.7 130 74.6
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 5.1e-51 208.4 471 29.3
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.4e-45 190.3 590 28.0
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.1e-42 180.6 143 59.4
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.3e-42 177.9 103 83.5
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 3.8e-38 165.6 127 63.0
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.2e-37 162.2 140 58.6
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 5.1e-35 155.2 338 36.7
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.4e-32 147.1 183 45.4
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.2e-31 144.1 691 23.0
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.1e-29 137.5 99 66.7
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.1e-29 134.8 145 53.8
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.1e-27 128.6 92 64.1
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.1e-26 127.5 518 24.5
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.3e-26 125.9 91 71.4
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 5.6e-26 125.2 130 49.2
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.4e-24 120.6 90 61.1
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.9e-22 112.1 112 50.0
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 1.1e-21 110.9 138 42.8
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 2.1e-20 106.7 107 49.5
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 2.7e-20 106.3 158 42.4
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.0e-19 104.4 110 51.8
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-17 96.7 80 61.2
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.8e-16 93.6 113 51.3
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 3.1e-16 92.8 71 59.2
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 5.3e-16 92.0 118 41.5
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 9.0e-16 91.3 190 31.1
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 5.9e-15 88.6 68 64.7
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 7.6e-15 88.2 59 66.1
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.7e-14 87.0 159 33.3
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 2.2e-14 86.7 51 68.6
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-14 86.7 84 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.3e-11 77.4 137 32.8
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.5e-10 73.2 159 39.0
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 4.3e-10 72.4 66 54.5
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.3e-09 70.9 87 46.0
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 3.7e-09 69.3 106 44.3
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 1.2e-07 64.3 97 33.0
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 1.2e-07 64.3 67 49.3
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 2.0e-07 63.5 70 47.1
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 2.6e-07 63.2 43 58.1
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 3.4e-07 62.8 96 43.8
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 8.5e-06 58.2 95 36.8


User provided reference genes

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