Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 0.0e+00 1433.7 760 100.0
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.0e-145 521.5 521 57.8
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.1e-133 480.7 684 49.7
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 5.1e-132 476.1 687 47.6
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 1.2e-128 464.9 674 46.4
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.2e-128 464.9 689 45.3
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.8e-127 459.9 678 46.5
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.2e-125 454.9 679 44.9
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.6e-122 444.5 678 45.4
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 2.6e-112 410.6 624 46.2
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 2.2e-111 407.5 667 43.2
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.1e-105 387.1 669 42.3
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.7e-103 381.3 543 46.4
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.8e-103 380.2 659 42.3
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.9e-102 377.9 571 45.7
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.7e-95 354.8 484 47.7
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 4.2e-94 350.1 535 46.5
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 2.7e-93 347.4 692 37.3
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 2.3e-92 344.4 478 48.3
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 3.0e-92 344.0 554 42.6
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 2.8e-90 337.4 527 44.2
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 3.7e-90 337.0 662 40.0
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 1.1e-89 335.5 660 39.5
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 3.6e-85 320.5 493 44.6
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 2.5e-83 314.3 549 43.9
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 3.3e-83 313.9 685 38.1
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 7.4e-83 312.8 609 39.6
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.3e-82 312.0 476 42.4
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 3.7e-82 310.5 476 42.2
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 6.3e-82 309.7 326 55.5
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.1e-81 308.9 476 42.0
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 1.5e-80 305.1 466 44.0
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 2.2e-79 301.2 533 41.7
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 6.5e-79 299.7 512 41.8
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 2.1e-77 294.7 462 41.1
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.7e-77 294.3 684 37.6
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 7.4e-75 286.2 257 58.8
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 7.4e-75 286.2 267 57.3
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 3.7e-74 283.9 527 39.1
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 9.1e-73 279.3 499 39.9
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 3.4e-72 277.3 278 55.4
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 4.5e-72 276.9 319 52.0
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.0e-71 275.8 479 40.1
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 3.8e-71 273.9 365 47.1
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 8.5e-71 272.7 584 39.2
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.5e-70 271.2 602 38.4
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 7.2e-70 269.6 365 46.8
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 9.4e-70 269.2 365 46.3
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.1e-69 268.1 549 39.3
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 2.1e-69 268.1 572 37.1
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 3.6e-69 267.3 257 54.9
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 4.7e-69 266.9 320 51.2
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 4.7e-69 266.9 680 34.3
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.4e-68 265.4 683 33.4
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.0e-68 264.2 461 39.5
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 5.7e-67 260.0 230 60.9
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 9.7e-67 259.2 667 34.6
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.7e-66 258.5 211 64.0
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 6.3e-66 256.5 519 38.5
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 3.1e-65 254.2 554 37.9
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.2e-61 242.3 671 33.8
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 4.0e-60 237.3 468 39.7
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 5.7e-59 233.4 572 35.8
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 7.5e-59 233.0 198 61.1
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.7e-58 230.7 363 45.2
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 8.2e-58 229.6 580 34.8
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.8e-57 228.4 182 63.7
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 1.8e-57 228.4 221 59.7
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 2.4e-57 228.0 265 50.2
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.7e-56 223.0 271 48.7
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 1.0e-55 222.6 271 48.7
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.3e-55 222.2 647 33.5
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.0e-55 220.3 275 48.4
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.1e-54 219.2 262 50.4
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 3.2e-54 217.6 332 41.6
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.2e-53 215.7 275 47.6
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.2e-53 215.7 584 35.6
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.4e-52 212.2 270 48.9
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.8e-52 211.8 179 62.0
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 6.8e-52 209.9 698 31.2
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 8.8e-52 209.5 275 47.6
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 4.4e-51 207.2 302 45.0
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.3e-50 205.7 177 62.1
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.2e-50 204.9 244 50.4
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 5.9e-48 196.8 219 50.7
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 2.3e-47 194.9 569 32.3
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 8.6e-47 193.0 283 44.2
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.9e-46 191.8 285 43.5
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.5e-46 191.4 285 43.5
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 9.5e-46 189.5 283 43.1
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 9.5e-46 189.5 283 43.1
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.8e-45 188.0 283 42.8
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 3.6e-45 187.6 284 41.9
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 4.7e-45 187.2 455 33.2
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 6.1e-45 186.8 357 37.3
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 3.0e-44 184.5 283 41.3
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 4.4e-43 180.6 269 41.6
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 2.2e-42 178.3 286 39.9
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.7e-42 177.6 218 50.5
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.1e-41 176.0 353 35.1
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 4.1e-41 174.1 177 53.7
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 8.6e-39 166.4 681 31.3
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 1.9e-38 165.2 327 38.2
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 6.8e-36 156.8 218 43.1
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.6e-35 154.8 438 35.2
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.9e-34 151.4 301 40.9
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 6.4e-34 150.2 547 29.3
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 7.0e-33 146.7 408 34.1
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.5e-32 144.4 495 32.3
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.6e-32 144.1 222 45.9
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.8e-32 143.3 244 44.7
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 3.3e-30 137.9 157 49.0
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-29 136.0 193 46.6
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 2.8e-29 134.8 176 47.2
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 4.9e-26 124.0 659 27.0
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 2.0e-24 118.6 153 45.8
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 1.0e-23 116.3 201 41.8
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 8.6e-23 113.2 203 36.9
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.3e-22 110.9 127 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 7.3e-22 110.2 235 34.5
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 7.5e-19 100.1 187 36.9
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 1.9e-17 95.5 116 45.7
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 7.8e-16 90.1 115 44.3
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 1.7e-15 89.0 108 46.3
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 5.1e-15 87.4 114 42.1
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 1.9e-14 85.5 80 55.0
Actinidia21472 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.1e-13 82.0 147 41.5
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.8e-13 81.6 59 62.7
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 3.1e-12 78.2 129 36.4
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 3.4e-11 74.7 47 66.0
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 9.9e-11 73.2 187 31.6
Atru.chr5.3383 Acer truncatum HOM05D005442 ORTHO05D006450 1.3e-10 72.8 134 44.0
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 4.9e-10 70.9 198 30.8
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.4e-09 69.3 183 31.1
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 9.2e-09 66.6 198 29.8
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 9.2e-09 66.6 217 30.9
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 2.7e-08 65.1 191 26.7
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 4.6e-08 64.3 136 32.4
SEGI_20616 Sequoiadendron giganteum HOM05D042574 ORTHO05D384790 1.3e-07 62.8 66 45.5
SEGI_40313 Sequoiadendron giganteum HOM05D042574 ORTHO05D384823 1.3e-07 62.8 66 45.5
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 2.3e-07 62.0 42 66.7
Actinidia39162 Actinidia chinensis HOM05D000686 ORTHO05D000512 3.9e-07 61.2 61 54.1
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 3.9e-07 61.2 159 30.2
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 3.9e-07 61.2 159 30.2
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 3.9e-07 61.2 159 30.2
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 8.7e-07 60.1 74 47.3
Lsat_1_v5_gn_1_105560 Lactuca sativa HOM05D003178 ORTHO05D003636 8.7e-07 60.1 59 49.2
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.1e-06 59.7 138 31.9
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 1.5e-06 59.3 187 28.9
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.5e-06 59.3 160 28.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.5e-06 59.3 160 28.1
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.5e-06 59.3 160 28.1
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 2.5e-06 58.5 124 32.3
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 3.3e-06 58.2 193 29.0
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 3.3e-06 58.2 167 28.1
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 4.3e-06 57.8 269 26.0
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 4.3e-06 57.8 136 30.9
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 5.6e-06 57.4 178 27.0
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 5.6e-06 57.4 183 27.9
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 7.3e-06 57.0 141 31.2


User provided reference genes

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