Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023342001 Vitis vinifera HOM05D002081 ORTHO05D002088 1.1e-78 296.6 151 100.0
GSVIVG01016466001 Vitis vinifera HOM05D002081 ORTHO05D002088 5.2e-20 101.7 83 71.1
Dinv16263 Davidia involucrata HOM05D002081 ORTHO05D002088 1.2e-16 90.5 64 70.3
TAR636G1215 Trochodendron aralioides HOM05D002081 ORTHO05D002088 3.5e-16 89.0 64 67.2
TAR636G1286 Trochodendron aralioides HOM05D002081 ORTHO05D002088 3.5e-16 89.0 64 67.2
Hma1.2p1_0039F.1_g024690 Hydrangea macrophylla HOM05D002081 ORTHO05D002088 4.5e-16 88.6 82 59.8
Nn2g11249 Nelumbo nucifera HOM05D002081 ORTHO05D002088 1.0e-15 87.4 64 67.2
CSS0002569 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 3.8e-15 85.5 64 67.2
Lj8C78T3 Lonicera japonica HOM05D002081 ORTHO05D002088 5.0e-15 85.1 64 68.8
Aqoxy1G00829 Aquilegia oxysepala HOM05D002081 ORTHO05D002088 6.5e-15 84.7 64 68.8
Duzib106G0506 Durio zibethinus HOM05D002081 ORTHO05D002088 6.5e-15 84.7 64 62.5
Gohir.D04G065000 Gossypium hirsutum HOM05D002081 ORTHO05D002088 6.5e-15 84.7 64 64.1
Gorai.012G073100 Gossypium raimondii HOM05D002081 ORTHO05D002088 6.5e-15 84.7 64 64.1
Eucgr.G02991 Eucalyptus grandis HOM05D002081 ORTHO05D002088 1.1e-14 84.0 71 64.8
Oeu001519.1 Olea europaea HOM05D002081 ORTHO05D002088 1.1e-14 84.0 64 64.1
Oeu031368.3 Olea europaea HOM05D000784 ORTHO05D000116 1.5e-14 83.6 64 64.1
TWI38G1695 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 1.5e-14 83.6 64 64.1
Gohir.A05G347300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.9e-14 83.2 64 62.5
TWI15G0806 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 1.9e-14 83.2 64 64.1
TAR633G0599 Trochodendron aralioides HOM05D002081 ORTHO05D002088 2.5e-14 82.8 64 62.5
CiPaw.01G292200 Carya illinoinensis HOM05D002081 ORTHO05D002088 3.2e-14 82.4 64 64.1
Nitab4.5_0000987g0040 Nicotiana tabacum HOM05D002081 ORTHO05D002088 3.2e-14 82.4 64 67.2
Peaxi162Scf00164g01416 Petunia axillaris HOM05D002081 ORTHO05D002088 3.2e-14 82.4 64 60.9
Actinidia02912 Actinidia chinensis HOM05D002081 ORTHO05D002088 4.2e-14 82.0 65 67.7
Prupe.2G240900 Prunus persica HOM05D002081 ORTHO05D002088 4.2e-14 82.0 64 64.1
Cc02_g07330 Coffea canephora HOM05D002081 ORTHO05D002088 5.5e-14 81.6 64 65.6
PSO339G3649 Papaver somniferum HOM05D002081 ORTHO05D002088 5.5e-14 81.6 64 62.5
PSO384G4711 Papaver somniferum HOM05D002081 ORTHO05D002088 5.5e-14 81.6 64 62.5
vmacro10211 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 5.5e-14 81.6 64 62.5
Cfa001415 Carpinus fangiana HOM05D002081 ORTHO05D002088 7.2e-14 81.3 64 62.5
Haze_17129 Corylus avellana HOM05D002081 ORTHO05D002088 7.2e-14 81.3 64 62.5
Thecc.10G034500 Theobroma cacao HOM05D002081 ORTHO05D002088 7.2e-14 81.3 64 57.8
MBI14_g09011_MAGBIO Magnolia biondii HOM05D002081 ORTHO05D002088 1.2e-13 80.5 64 62.5
arahy.Tifrunner.gnm1.ann1.W8JJXT Arachis hypogaea HOM05D002081 ORTHO05D002088 1.6e-13 80.1 87 49.4
arahy.Tifrunner.gnm1.ann1.YTA3II Arachis hypogaea HOM05D002081 ORTHO05D002088 1.6e-13 80.1 87 49.4
CAN.G1184.5 Capsicum annuum HOM05D002081 ORTHO05D002088 1.6e-13 80.1 64 57.8
FvH4_7g23450 Fragaria vesca HOM05D002081 ORTHO05D002088 1.6e-13 80.1 64 57.8
ATR0559G126 Amborella trichopoda HOM05D002081 ORTHO05D002088 2.1e-13 79.7 66 57.6
Ciclev10032419m.g Citrus clementina HOM05D002081 ORTHO05D002088 2.1e-13 79.7 64 56.2
Lalb_Chr10g0104771 Lupinus albus HOM05D002081 ORTHO05D002088 2.1e-13 79.7 64 59.4
CsaV3_6G001420 Cucumis sativus L. HOM05D002081 ORTHO05D002088 2.7e-13 79.3 64 60.9
Sc10g0001880 Simmondsia chinensis HOM05D002081 ORTHO05D002088 2.7e-13 79.3 64 62.5
Duzib114G0689 Durio zibethinus HOM05D002081 ORTHO05D002088 3.6e-13 79.0 64 57.8
Manes.10G024700 Manihot esculenta HOM05D002081 ORTHO05D002088 3.6e-13 79.0 64 59.4
Peaxi162Scf00658g00313 Petunia axillaris HOM05D002081 ORTHO05D002088 3.6e-13 79.0 64 64.1
DCAR_027588 Daucus carota HOM05D002081 ORTHO05D002088 6.1e-13 78.2 64 60.9
Migut.F01287 Erythranthe guttata HOM05D002081 ORTHO05D002088 6.1e-13 78.2 64 60.9
Phvul.008G230200 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 6.1e-13 78.2 64 57.8
Rhsim09G0168000 Rhododendron simsii HOM05D002081 ORTHO05D002088 6.1e-13 78.2 83 51.8
Rhsim09G0168900 Rhododendron simsii HOM05D002081 ORTHO05D002088 6.1e-13 78.2 83 51.8
Aa31LG5G19810 Aethionema arabicum HOM05D002081 ORTHO05D002088 8.0e-13 77.8 64 57.8
Sed0012888 Sechium edule HOM05D002081 ORTHO05D002088 8.0e-13 77.8 64 59.4
VMungo0647G2156 Vigna mungo HOM05D002081 ORTHO05D002088 8.0e-13 77.8 87 48.3
CiPaw.02G187300 Carya illinoinensis HOM05D002081 ORTHO05D002088 1.4e-12 77.0 64 59.4
Rhsim03G0136700 Rhododendron simsii HOM05D002081 ORTHO05D002088 1.4e-12 77.0 66 57.6
MELO3C008246.2 Cucumis melo HOM05D002081 ORTHO05D002088 1.8e-12 76.6 64 59.4
Glyma.02G251200 Glycine max HOM05D002081 ORTHO05D002088 1.8e-12 76.6 64 56.2
Sed0003628 Sechium edule HOM05D002081 ORTHO05D002088 1.8e-12 76.6 64 59.4
ClCG11G006590 Citrullus lanatus HOM05D002081 ORTHO05D002088 2.3e-12 76.3 64 57.8
MD01G1140300 Malus domestica HOM05D002081 ORTHO05D002088 2.3e-12 76.3 65 60.0
Nn2g13497 Nelumbo nucifera HOM05D002081 ORTHO05D002088 2.3e-12 76.3 64 56.2
FAN03G2328 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.0e-12 75.9 64 53.1
LjContig00141g0016830 Lotus japonicus HOM05D002081 ORTHO05D002088 3.0e-12 75.9 64 54.7
QL08p061675 Quercus lobata HOM05D002081 ORTHO05D002088 3.0e-12 75.9 64 56.2
unitig_27.g25068 Utricularia gibba HOM05D002081 ORTHO05D002088 3.0e-12 75.9 64 57.8
MSTRG.8286 Avicennia marina HOM05D002081 ORTHO05D002088 4.0e-12 75.5 64 60.9
Glyma.14G065500 Glycine max HOM05D002081 ORTHO05D002088 4.0e-12 75.5 64 56.2
MD07G1204600 Malus domestica HOM05D002081 ORTHO05D002088 4.0e-12 75.5 65 60.0
SGA_v2.0_scaffold2G00987 Striga asiatica HOM05D002081 ORTHO05D002088 4.0e-12 75.5 64 56.2
A03p22300 Brassica napus HOM05D002081 ORTHO05D002088 5.2e-12 75.1 64 57.8
BraA03t11462Z Brassica rapa HOM05D002081 ORTHO05D002088 5.2e-12 75.1 64 57.8
vmacro07036 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 5.2e-12 75.1 66 56.1
MSTRG.261 Avicennia marina HOM05D002081 ORTHO05D002088 6.7e-12 74.7 64 56.2
Ca_05907_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 1.2e-11 73.9 64 57.8
Gohir.A10G223500 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.2e-11 73.9 64 56.2
Atru.chr12.309 Acer truncatum HOM05D002081 ORTHO05D002088 1.5e-11 73.6 87 42.5
Atru.chr12.338 Acer truncatum HOM05D002081 ORTHO05D002088 1.5e-11 73.6 87 42.5
BcaB01g03572 Brassica carinata HOM05D002081 ORTHO05D002088 1.5e-11 73.6 64 56.2
CANSAT56G4043 Cannabis sativa HOM05D002081 ORTHO05D002088 1.5e-11 73.6 64 56.2
CANSAT64G2080 Cannabis sativa HOM05D002081 ORTHO05D002088 1.5e-11 73.6 64 56.2
COL.COLO4_25522 Corchorus olitorius HOM05D002081 ORTHO05D002088 1.5e-11 73.6 64 56.2
Thhalv10017061m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 1.5e-11 73.6 64 56.2
BolC3t15026H Brassica oleracea HOM05D002081 ORTHO05D002088 2.0e-11 73.2 64 56.2
CARHR134690 Cardamine hirsuta HOM05D002081 ORTHO05D002088 2.0e-11 73.2 64 56.2
Gohir.D10G235900 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.0e-11 73.2 64 56.2
Gorai.011G269800 Gossypium raimondii HOM05D002081 ORTHO05D002088 2.0e-11 73.2 64 56.2
Psat2g038920 Pisum sativum HOM05D002081 ORTHO05D002088 2.0e-11 73.2 64 57.8
Sabra08G0044400 Salix brachista HOM05D002081 ORTHO05D002088 2.0e-11 73.2 64 56.2
Sp4g22090 Schrenkiella parvula HOM05D002081 ORTHO05D002088 2.0e-11 73.2 64 56.2
AT2G39805 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 3.3e-11 72.4 64 54.7
RcHm_v2.0_Chr1g0368591 Rosa chinensis HOM05D002081 ORTHO05D002088 3.3e-11 72.4 64 51.6
Sopen05g031450 Solanum pennellii HOM05D002081 ORTHO05D002088 3.3e-11 72.4 64 54.7
AL4G37350 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 4.4e-11 72.0 64 54.7
A04p30240 Brassica napus HOM05D002081 ORTHO05D002088 4.4e-11 72.0 64 54.7
BraA04t18484Z Brassica rapa HOM05D002081 ORTHO05D002088 4.4e-11 72.0 64 54.7
C03p26400 Brassica napus HOM05D002081 ORTHO05D002088 5.7e-11 71.6 64 54.7
Carub.0004s2191 Capsella rubella HOM05D002081 ORTHO05D002088 5.7e-11 71.6 64 54.7
CDE04G2263 Ceratophyllum demersum HOM05D001947 ORTHO05D002440 5.7e-11 71.6 87 49.4
SalBow6G3204 Salvia bowleyana HOM05D002081 ORTHO05D002088 7.5e-11 71.2 64 54.7
SalBow6G3476 Salvia bowleyana HOM05D002081 ORTHO05D002088 7.5e-11 71.2 64 54.7
Solyc05g052930.3 Solanum lycopersicum HOM05D002081 ORTHO05D002088 7.5e-11 71.2 64 54.7
PGSC0003DMG400027135 Solanum tuberosum HOM05D002081 ORTHO05D002088 7.5e-11 71.2 64 54.7
Gohir.A05G302300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 9.7e-11 70.9 64 56.2
SHI03706 Sapria himalayana HOM05D002081 ORTHO05D002088 9.7e-11 70.9 66 54.5
THA.LOC104808815 Tarenaya hassleriana HOM05D002081 ORTHO05D002088 9.7e-11 70.9 64 53.1
C04p67620 Brassica napus HOM05D002081 ORTHO05D002088 1.3e-10 70.5 64 53.1
BolC4t28261H Brassica oleracea HOM05D002081 ORTHO05D002088 1.3e-10 70.5 64 53.1
PGR142G4126 Punica granatum HOM05D002081 ORTHO05D002088 1.3e-10 70.5 64 54.7
Phvul.001G237000 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 1.7e-10 70.1 87 44.8
Potri.008G060300 Populus trichocarpa HOM05D002081 ORTHO05D002088 1.7e-10 70.1 64 54.7
BcaC01g05463 Brassica carinata HOM05D002081 ORTHO05D002088 2.2e-10 69.7 64 53.1
Gohir.D05G301800 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.2e-10 69.7 64 54.7
Gorai.009G319900 Gossypium raimondii HOM05D002081 ORTHO05D002088 2.2e-10 69.7 64 54.7
TPR.G25857 Trifolium pratense HOM05D002081 ORTHO05D002088 2.2e-10 69.7 87 46.0
Medtr3g069150 Medicago truncatula HOM05D002081 ORTHO05D002088 2.8e-10 69.3 64 53.1
Medtr3g069170 Medicago truncatula HOM05D002081 ORTHO05D002088 2.8e-10 69.3 64 53.1
Medtr5g081040 Medicago truncatula HOM05D002081 ORTHO05D002088 2.8e-10 69.3 64 51.6
Psat5g128720 Pisum sativum HOM05D002081 ORTHO05D002088 3.7e-10 68.9 64 53.1
Sabra10G0152600 Salix brachista HOM05D002081 ORTHO05D002088 3.7e-10 68.9 64 53.1
DCAR_024872 Daucus carota HOM05D002081 ORTHO05D002088 6.3e-10 68.2 64 53.1
Potri.010G198300 Populus trichocarpa HOM05D002081 ORTHO05D002088 6.3e-10 68.2 64 53.1
HanXRQChr08g0221211 Helianthus annuus HOM05D002081 ORTHO05D002088 8.2e-10 67.8 64 51.6
VMungo1383G3669 Vigna mungo HOM05D002081 ORTHO05D002088 3.1e-09 65.9 64 50.0
TPR.G10328 Trifolium pratense HOM05D002081 ORTHO05D002088 1.6e-08 63.5 64 48.4
EL10Ac2g04688 Beta vulgaris HOM05D002081 ORTHO05D002088 5.9e-08 61.6 64 57.8
Lsat_1_v5_gn_8_14680 Lactuca sativa HOM05D002081 ORTHO05D002088 1.0e-07 60.8 83 44.6
Nitab4.5_0008497g0010 Nicotiana tabacum HOM05D002081 ORTHO05D002088 1.0e-07 60.8 47 66.0
Ah.16g102690 Amaranthus hybridus HOM05D001947 ORTHO05D002440 2.9e-07 59.3 64 53.1
AUR62012147 Chenopodium quinoa HOM05D002081 ORTHO05D002088 2.9e-07 59.3 64 51.6
AUR62040688 Chenopodium quinoa HOM05D002081 ORTHO05D002088 2.9e-07 59.3 64 51.6
Hund13800 Selenicereus undatus HOM05D002081 ORTHO05D002088 6.5e-07 58.2 64 51.6
Hund16051 Selenicereus undatus HOM05D002081 ORTHO05D002088 2.5e-06 56.2 64 50.0
Atru.chr12.302 Acer truncatum HOM05D002081 ORTHO05D002088 5.5e-06 55.1 53 45.3
Atru.chr12.307 Acer truncatum HOM05D002081 ORTHO05D002088 5.5e-06 55.1 53 45.3
HPP92_003399 Vanilla planifolia HOM05D002081 ORTHO05D002088 9.4e-06 54.3 64 40.6


User provided reference genes

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