Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.8e-45 184.9 92 100.0
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 1.4e-31 139.4 89 75.3
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.5e-30 133.7 93 71.0
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 2.8e-29 131.7 86 74.4
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 3.7e-29 131.3 86 74.4
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 4.8e-29 131.0 86 74.4
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 4.8e-29 131.0 86 74.4
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 4.8e-29 131.0 86 74.4
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 4.8e-29 131.0 86 74.4
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 4.8e-29 131.0 86 74.4
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 4.8e-29 131.0 86 74.4
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 4.8e-29 131.0 86 74.4
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 8.2e-29 130.2 86 73.3
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 8.2e-29 130.2 86 73.3
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.1e-28 129.8 86 74.4
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.1e-28 129.8 82 78.0
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.1e-28 129.8 82 78.0
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.8e-28 129.0 86 73.3
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.8e-28 129.0 86 73.3
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 1.8e-28 129.0 86 73.3
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.1e-28 128.3 86 72.1
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.1e-28 128.3 86 72.1
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.1e-28 128.3 86 72.1
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.1e-28 128.3 86 72.1
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 3.1e-28 128.3 86 69.8
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.1e-28 128.3 86 72.1
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.1e-28 128.3 86 72.1
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 4.1e-28 127.9 86 73.3
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 4.1e-28 127.9 86 73.3
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.1e-28 127.9 86 72.1
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 5.3e-28 127.5 86 72.1
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 5.3e-28 127.5 86 72.1
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 5.3e-28 127.5 86 72.1
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 5.3e-28 127.5 85 72.9
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.3e-28 127.5 86 73.3
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.2e-27 126.3 86 70.9
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.6e-27 125.9 89 67.4
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.0e-27 125.6 84 73.8
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.0e-27 125.6 86 73.3
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 2.0e-27 125.6 86 72.1
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.7e-27 125.2 82 75.6
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.7e-27 125.2 84 73.8
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-27 124.8 86 70.9
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-27 124.8 86 70.9
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-27 124.8 86 70.9
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 3.5e-27 124.8 86 70.9
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.5e-27 124.8 79 73.4
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.9e-27 124.0 82 74.4
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 7.7e-27 123.6 86 70.9
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 7.7e-27 123.6 86 70.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.0e-26 123.2 86 70.9
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 1.3e-26 122.9 79 72.2
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-26 122.9 79 74.7
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.7e-26 122.5 82 74.4
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.7e-26 122.5 86 69.8
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-26 122.5 83 68.7
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.9e-26 121.7 82 74.4
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 2.9e-26 121.7 86 70.9
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 2.9e-26 121.7 86 70.9
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.8e-26 121.3 86 72.1
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 4.2e-25 117.9 86 68.6
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.6e-24 115.9 82 70.7
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 3.6e-24 114.8 82 70.7
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.0e-24 113.6 82 67.1
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.4e-23 112.8 86 67.4
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 8.8e-23 110.2 86 65.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.6e-22 108.6 65 80.0
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 2.6e-22 108.6 72 72.2
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 3.4e-22 108.2 75 69.3
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 3.4e-22 108.2 72 68.1
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 4.4e-22 107.8 72 70.8
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 4.4e-22 107.8 74 68.9
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.7e-22 107.5 68 76.5
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 9.8e-22 106.7 75 68.0
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.7e-21 105.9 92 62.0
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.7e-21 105.9 92 62.0
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.7e-21 105.9 92 62.0
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.7e-21 105.9 86 64.0
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 2.2e-21 105.5 72 70.8
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.2e-21 105.5 69 73.9
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.2e-21 105.5 69 73.9
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 2.2e-21 105.5 71 69.0
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.8e-21 105.1 86 62.8
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.8e-20 102.4 69 69.6
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.8e-20 102.4 71 69.0
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.2e-19 99.8 72 68.1
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 4.5e-19 97.8 66 69.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.3e-18 96.3 68 70.6
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.7e-18 95.9 61 75.4
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 5.0e-18 94.4 86 61.6
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 5.0e-18 94.4 64 68.8
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 4.2e-17 91.3 75 60.0
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 9.5e-17 90.1 77 61.0
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 4.7e-16 87.8 53 77.4
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.3e-15 85.5 66 60.6
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 2.6e-14 82.0 54 72.2
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 3.4e-14 81.6 65 64.6
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.7e-14 80.9 54 68.5
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 7.5e-14 80.5 62 62.9
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 9.8e-14 80.1 60 61.7
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 2.4e-12 75.5 79 53.2
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 3.1e-12 75.1 54 64.8
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 4.1e-12 74.7 44 81.8
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 2.0e-11 72.4 75 49.3
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 2.0e-11 72.4 44 79.5
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 1.3e-10 69.7 40 82.5
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.6e-10 67.4 51 62.7
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 6.6e-10 67.4 45 66.7
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.5e-09 66.2 37 78.4
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 2.8e-08 62.0 62 48.4
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 6.1e-08 60.8 36 83.3
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 6.1e-08 60.8 40 75.0
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 8.0e-08 60.5 54 59.3
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 3.0e-07 58.5 47 55.3
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.2e-07 57.8 41 61.0
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 1.2e-06 56.6 64 48.4
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.5e-06 56.2 74 44.6
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-06 55.8 42 57.1
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 2.0e-06 55.8 38 63.2
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.6e-06 55.5 38 60.5
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 3.4e-06 55.1 32 81.2
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 3.4e-06 55.1 46 52.2
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 4.4e-06 54.7 31 80.6


User provided reference genes

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