Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.9e-55 217.6 115 100.0
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-49 199.9 109 97.2
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.0e-48 195.7 109 94.5
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.9e-47 191.0 109 93.6
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.9e-46 189.1 108 92.6
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 4.8e-34 147.9 115 67.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.8e-31 138.3 77 93.5
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 3.2e-30 135.2 108 63.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 5.5e-30 134.4 113 65.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.7e-29 132.1 113 60.2
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.7e-29 132.1 113 59.3
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.3e-28 129.0 106 59.4
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 3.0e-28 128.6 105 64.8
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 5.1e-28 127.9 106 65.1
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 8.7e-28 127.1 97 67.0
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.1e-27 126.7 106 62.3
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.1e-27 126.7 115 59.1
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.1e-27 126.7 102 63.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.1e-27 126.7 107 60.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.9e-27 125.9 100 65.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.3e-27 124.8 100 65.0
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.7e-27 124.4 106 61.3
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 7.4e-27 124.0 115 54.8
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.1e-26 122.5 101 60.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.8e-26 122.1 104 66.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.7e-26 121.7 104 66.3
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.7e-26 121.7 104 66.3
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.7e-26 121.7 99 63.6
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.8e-26 121.3 101 64.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.8e-26 121.3 105 60.0
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.8e-26 121.3 101 62.4
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 4.8e-26 121.3 106 56.6
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 6.3e-26 120.9 106 55.7
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 6.3e-26 120.9 107 57.0
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.1e-25 120.2 99 62.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.8e-25 119.4 102 62.7
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.1e-25 118.6 106 58.5
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 4.1e-25 118.2 111 56.8
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.9e-25 117.5 111 56.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 6.9e-25 117.5 111 56.8
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.9e-25 117.5 111 56.8
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 9.0e-25 117.1 101 57.4
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.5e-24 116.3 104 59.6
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.0e-24 115.9 99 57.6
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 2.0e-24 115.9 107 54.2
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.6e-24 115.5 105 56.2
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.6e-24 115.5 105 56.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.4e-24 115.2 106 52.8
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.4e-24 115.2 106 52.8
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 4.5e-24 114.8 109 55.0
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.9e-24 114.4 106 52.8
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 5.9e-24 114.4 95 62.1
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 7.6e-24 114.0 124 54.8
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.0e-23 113.6 113 47.8
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.0e-23 113.6 113 47.8
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.3e-23 113.2 98 59.2
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.7e-23 112.8 107 53.3
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.7e-23 112.8 101 60.4
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.9e-23 112.1 109 52.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.9e-23 112.1 98 62.2
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.0e-23 111.3 107 52.3
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.5e-23 110.9 99 56.6
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.1e-22 110.2 109 55.0
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-22 109.8 63 90.5
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.9e-22 109.4 95 56.8
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.5e-22 109.0 111 54.1
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.5e-22 109.0 111 54.1
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.5e-22 109.0 107 55.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.5e-22 109.0 95 57.9
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 5.5e-22 107.8 104 54.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 5.5e-22 107.8 100 56.0
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 9.3e-22 107.1 105 50.5
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 9.3e-22 107.1 102 59.8
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.2e-21 106.7 95 56.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.6e-21 106.3 95 56.8
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 4.6e-21 104.8 114 50.9
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 4.6e-21 104.8 101 55.4
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 4.6e-21 104.8 101 53.5
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 7.9e-21 104.0 94 53.2
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.8e-20 102.8 107 51.4
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.8e-20 102.8 107 51.4
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.8e-20 102.8 96 56.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.3e-20 102.4 105 51.4
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 3.9e-20 101.7 94 50.0
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 3.9e-20 101.7 99 50.5
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 5.1e-20 101.3 101 49.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.1e-20 101.3 97 53.6
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.1e-19 100.1 102 50.0
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.5e-19 99.8 101 55.4
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.5e-19 99.0 104 51.0
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 5.7e-19 97.8 101 46.5
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 7.4e-19 97.4 79 64.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 9.7e-19 97.1 94 50.0
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 9.7e-19 97.1 105 48.6
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.6e-18 96.3 106 45.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 3.7e-18 95.1 98 53.1
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 6.3e-18 94.4 106 44.3
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.1e-17 93.6 99 47.5
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.8e-17 92.8 100 49.0
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 4.1e-17 91.7 100 43.0
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 3.4e-16 88.6 101 44.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 5.9e-16 87.8 100 48.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.0e-15 87.0 95 44.2
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-15 86.7 111 47.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.3e-15 86.7 88 54.5
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.9e-15 85.5 106 40.6
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.8e-15 85.1 96 45.8
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.1e-14 83.6 106 41.5
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.9e-14 82.8 113 39.8
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.2e-14 82.0 98 40.8
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.2e-14 81.6 96 41.7
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.2e-13 80.1 93 44.1
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.2e-13 80.1 93 44.1
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.6e-13 78.2 102 43.1
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.6e-13 78.2 74 55.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 3.9e-12 75.1 91 44.0
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 6.7e-12 74.3 100 40.0
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.5e-11 72.4 102 41.2
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.5e-11 72.4 100 39.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.3e-11 72.0 61 60.7
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 4.3e-11 71.6 105 37.1
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.3e-10 70.1 107 37.4
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 3.7e-10 68.6 96 40.6
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.7e-10 68.6 38 92.1
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.1e-09 67.0 102 37.3
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.4e-09 65.9 56 62.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 6.9e-09 64.3 105 34.3
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 3.4e-08 62.0 95 37.9
Solyc01g150163.1 Solanum lycopersicum HOM05D003578 ORTHO05D004021 4.5e-08 61.6 85 47.1
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 2.2e-07 59.3 104 33.7
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 5.0e-07 58.2 100 35.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 5.0e-07 58.2 100 35.0
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.5e-06 55.8 46 56.5
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 3.2e-06 55.5 99 33.3
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 5.5e-06 54.7 46 54.3
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 5.5e-06 54.7 46 54.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.4e-06 53.9 51 51.0


User provided reference genes

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