Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.0e-85 318.2 173 100.0
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.4e-76 288.5 162 97.5
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-73 280.0 162 94.4
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-70 268.1 162 90.7
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.2e-52 210.3 162 71.6
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 3.9e-48 195.3 171 61.4
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-46 189.1 108 92.6
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.7e-46 188.7 154 70.1
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.8e-46 188.3 154 70.1
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 8.2e-46 187.6 162 66.0
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.4e-45 186.8 154 69.5
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 4.1e-45 185.3 152 67.1
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.9e-45 184.5 161 62.1
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.2e-44 183.7 154 66.2
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.4e-44 182.2 155 65.8
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.0e-43 180.6 154 67.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.0e-43 180.6 161 61.5
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 3.8e-43 178.7 153 65.4
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 3.8e-43 178.7 160 60.0
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.5e-43 177.6 153 62.7
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.4e-42 176.8 155 60.6
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 5.5e-42 174.9 166 57.8
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.2e-41 173.7 153 60.8
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 4.6e-41 171.8 154 63.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-40 170.6 164 56.7
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.8e-40 169.9 149 63.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 2.3e-40 169.5 164 56.1
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 3.0e-40 169.1 163 54.6
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.9e-40 168.7 148 60.8
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.9e-40 168.7 177 57.6
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 5.1e-40 168.3 168 52.4
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.8e-40 167.5 164 56.1
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.1e-39 167.2 150 60.7
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.5e-39 166.8 190 53.7
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-39 166.4 164 55.5
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.0e-39 166.4 161 55.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.0e-39 166.4 159 59.7
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.0e-39 166.4 152 63.2
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 2.5e-39 166.0 160 56.9
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.3e-39 165.6 159 59.1
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.3e-39 165.6 159 59.1
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.3e-39 165.6 151 59.6
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 4.3e-39 165.2 153 58.2
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 4.3e-39 165.2 152 60.5
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 5.7e-39 164.9 150 58.7
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 5.7e-39 164.9 176 56.2
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.4e-39 164.5 149 61.1
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 7.4e-39 164.5 165 56.4
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.3e-38 163.7 155 58.7
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.7e-38 163.3 159 57.9
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.7e-38 163.3 153 59.5
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.2e-38 162.9 156 61.5
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.8e-38 162.5 152 59.2
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.7e-38 162.2 152 59.9
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 6.3e-38 161.4 157 56.7
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.2e-38 161.0 151 59.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 8.2e-38 161.0 152 58.6
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.1e-37 160.6 167 49.7
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.8e-37 159.8 150 58.0
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 4.1e-37 158.7 148 56.1
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 5.3e-37 158.3 166 53.6
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 6.9e-37 157.9 150 57.3
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 9.1e-37 157.5 150 57.3
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 3.4e-36 155.6 151 57.0
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 3.4e-36 155.6 160 53.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 7.7e-36 154.5 146 55.5
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.0e-35 154.1 150 58.7
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-35 154.1 153 54.9
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 6.5e-35 151.4 155 56.1
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.9e-34 149.8 156 53.2
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 2.5e-34 149.4 153 54.9
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.2e-34 149.1 151 54.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 5.5e-34 148.3 152 55.3
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 5.5e-34 148.3 155 52.3
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.4e-34 147.5 151 54.3
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 9.4e-34 147.5 151 54.3
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.1e-33 146.4 158 51.3
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.7e-33 146.0 158 50.0
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.7e-33 146.0 158 50.0
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.6e-33 145.6 158 51.3
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.6e-33 145.6 150 54.7
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 4.7e-33 145.2 150 53.3
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.1e-33 144.8 158 50.6
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 6.1e-33 144.8 162 50.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.0e-32 144.1 156 50.6
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-32 142.9 167 49.7
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-32 142.9 167 49.7
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 5.1e-32 141.7 141 53.9
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.0e-31 139.8 153 51.6
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 4.4e-31 138.7 154 48.1
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 4.4e-31 138.7 153 47.7
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.7e-30 136.7 146 50.0
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.8e-30 136.0 149 49.0
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.8e-30 136.0 143 56.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.7e-30 135.6 147 50.3
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.8e-30 135.2 152 51.3
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-30 135.2 82 86.6
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.1e-29 134.0 153 49.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.4e-29 132.9 152 49.3
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.3e-29 131.7 77 89.6
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.9e-28 128.3 117 56.4
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.0e-27 127.5 150 48.7
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.7e-27 126.7 150 46.7
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 8.5e-27 124.4 160 42.5
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-26 124.0 180 45.0
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-26 124.0 155 43.2
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.9e-26 123.2 144 45.1
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.5e-26 122.9 154 42.9
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 4.2e-26 122.1 148 48.0
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.5e-26 121.7 150 43.3
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 6.1e-25 118.2 147 44.2
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 6.1e-25 118.2 147 44.2
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 8.0e-25 117.9 145 48.3
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 8.8e-24 114.4 161 41.0
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.5e-23 113.6 186 41.9
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 9.7e-23 110.9 150 44.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 2.8e-22 109.4 153 39.9
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.1e-21 107.5 154 39.6
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.6e-20 103.6 146 42.5
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.3e-19 100.5 146 38.4
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 3.8e-19 99.0 161 36.6
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.0e-19 98.6 146 37.7
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.9e-18 96.7 153 37.9
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.9e-18 96.7 153 37.9
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.9e-18 96.7 155 36.8
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 2.5e-18 96.3 124 48.4
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.4e-18 94.4 65 80.0
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.8e-16 88.2 117 41.0
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 8.8e-16 87.8 153 35.3
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.7e-15 85.1 128 38.3
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 7.5e-15 84.7 153 35.3
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 7.5e-15 84.7 153 35.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 3.7e-14 82.4 151 35.8
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.7e-09 66.2 55 61.8
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 8.0e-09 64.7 152 33.6
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.0e-08 62.8 61 54.1
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 5.2e-08 62.0 56 58.9
Solyc01g150163.1 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.5e-07 60.5 85 47.1


User provided reference genes

Program Settings