Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.1e-279 964.1 510 100.0
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.4e-248 860.1 510 91.2
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.4e-172 608.6 567 60.5
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.7e-171 605.5 578 58.8
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 7.7e-169 597.8 579 58.9
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.5e-167 592.8 563 62.5
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.8e-166 589.3 569 61.3
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 5.7e-164 581.6 591 57.4
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.4e-162 575.1 551 59.0
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 7.8e-161 571.2 563 56.8
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 3.3e-159 565.8 569 56.4
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.0e-156 556.6 567 57.3
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 4.4e-156 555.4 587 55.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.5e-156 554.7 559 55.5
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 4.9e-155 552.0 579 54.9
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.0e-152 542.7 570 54.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.5e-151 540.4 565 56.5
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.6e-150 537.0 564 54.4
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.2e-150 535.0 563 54.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.8e-149 533.5 573 53.4
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.8e-149 533.5 573 53.4
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.5e-148 530.4 580 53.6
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.6e-148 529.6 563 53.3
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 7.5e-148 528.1 566 53.7
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 9.2e-146 521.2 579 53.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.2e-145 520.8 564 52.5
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 3.5e-145 519.2 576 51.9
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.6e-145 518.8 571 52.7
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 7.8e-145 518.1 580 52.2
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 7.8e-145 518.1 585 52.8
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.1e-143 514.2 575 51.5
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.5e-143 513.8 575 51.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.3e-143 512.7 553 52.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 4.3e-143 512.3 570 52.5
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 5.6e-143 511.9 569 52.0
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.3e-143 511.5 570 54.2
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 9.5e-143 511.1 572 51.6
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 8.1e-142 508.1 576 52.1
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.3e-141 506.5 569 51.5
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 3.1e-141 506.1 566 52.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 6.8e-141 505.0 577 51.3
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 8.9e-141 504.6 571 51.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 7.5e-140 501.5 587 52.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.3e-139 500.7 553 52.1
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.2e-139 500.0 582 51.2
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.9e-138 496.9 531 52.7
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 5.4e-138 495.4 570 51.6
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 9.2e-138 494.6 647 48.1
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 7.8e-137 491.5 574 51.7
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.7e-136 490.3 576 50.7
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 2.3e-136 490.0 566 50.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.2e-134 484.2 569 53.1
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.7e-131 473.8 536 50.6
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.2e-131 473.4 574 49.0
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.8e-131 472.6 574 50.0
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.4e-130 470.7 563 48.7
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.4e-130 470.7 566 49.1
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.4e-130 469.9 575 48.9
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.2e-130 469.5 583 47.7
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.4e-130 468.8 573 50.1
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 9.2e-130 468.0 573 49.0
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 9.2e-130 468.0 561 49.6
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-129 467.2 580 47.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-129 467.2 573 48.9
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 4.6e-129 465.7 582 48.8
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 6.0e-129 465.3 573 48.7
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-128 464.2 574 48.6
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-128 464.2 582 47.6
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.6e-128 461.8 573 48.5
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.5e-127 460.7 571 49.4
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.3e-127 459.1 580 48.8
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.1e-125 454.5 598 50.5
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.4e-125 453.4 565 47.3
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 3.1e-125 453.0 552 47.8
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.2e-125 452.2 541 49.9
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 9.0e-125 451.4 541 51.4
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.0e-124 450.3 570 47.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.4e-122 444.1 583 46.7
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.7e-121 439.9 575 47.3
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 2.3e-120 436.8 594 45.3
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 5.1e-120 435.6 571 47.3
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 6.6e-120 435.3 545 46.4
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 8.7e-120 434.9 572 47.4
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.1e-119 434.5 571 45.2
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.1e-119 434.5 574 46.7
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 9.6e-119 431.4 571 46.9
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.1e-118 430.3 457 56.5
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 3.1e-117 426.4 402 60.9
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 5.3e-117 425.6 548 48.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 3.4e-116 422.9 495 48.7
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 9.9e-116 421.4 575 46.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.4e-115 418.7 334 67.4
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-114 417.5 575 45.4
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 3.2e-114 416.4 572 44.1
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 7.1e-114 415.2 573 44.0
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.7e-113 413.3 573 44.0
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.7e-113 413.3 478 50.4
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.5e-113 412.9 556 45.0
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.9e-112 409.5 387 57.1
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.5e-111 407.5 571 42.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 4.3e-111 406.0 573 43.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.6e-111 404.8 574 44.6
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.6e-110 404.1 500 47.8
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-109 401.4 572 41.6
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 6.9e-109 398.7 573 42.9
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 3.4e-108 396.4 573 42.8
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 5.8e-108 395.6 274 76.3
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 7.6e-108 395.2 552 42.9
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 7.6e-108 395.2 561 43.3
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.3e-107 394.4 576 41.8
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.9e-107 393.3 569 43.8
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 3.8e-107 392.9 572 41.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.1e-106 391.3 569 44.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.0e-104 384.8 463 51.6
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 8.7e-104 381.7 531 43.5
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.6e-103 378.3 569 41.5
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 6.2e-102 375.6 370 58.1
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-98 364.8 591 40.6
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.1e-97 360.5 569 41.3
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.0e-97 359.0 266 69.9
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.8e-96 357.5 565 42.3
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 9.0e-93 345.1 465 46.2
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.1e-89 332.4 420 48.8
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-87 327.8 458 44.1
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.5e-87 327.8 471 44.8
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-77 294.7 220 73.2
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.7e-76 288.9 332 51.5
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 2.9e-75 287.0 582 35.2
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.7e-73 279.6 162 94.4
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-72 278.5 163 93.9
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.8e-72 275.4 250 59.6
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.6e-68 264.6 564 33.7
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.8e-62 243.8 437 37.3
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 5.2e-56 223.0 414 33.8
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.9e-50 204.5 462 35.3
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.2e-50 203.4 248 43.5
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.0e-49 199.1 109 97.2
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 2.0e-44 184.5 159 63.5
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 8.9e-40 169.1 353 33.7
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.2e-39 168.7 400 34.5
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.9e-38 163.3 251 42.6
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 2.0e-36 157.9 161 47.2
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-33 148.3 141 56.0
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.4e-31 140.6 82 90.2
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.8e-31 139.0 77 94.8
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-29 135.6 117 59.0
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.4e-29 134.4 133 55.6
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.1e-28 131.3 145 49.7
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 4.6e-28 130.2 162 46.3
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 2.3e-27 127.9 495 25.3
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.5e-26 125.2 95 71.6
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.6e-26 123.2 175 44.0
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.8e-25 120.9 122 55.7
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.2e-23 115.5 105 58.1
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 7.5e-23 112.8 525 25.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-22 112.1 202 40.6
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.7e-22 111.7 92 64.1
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.0e-19 102.4 136 46.3
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.6e-19 99.4 55 94.5
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 1.9e-18 98.2 134 40.3
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.3e-18 97.4 123 42.3
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 1.6e-17 95.1 125 48.0
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.8e-17 94.4 207 36.2
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.0e-16 90.5 117 42.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 4.0e-16 90.5 67 67.2
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.6e-15 86.3 117 41.9
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.4e-14 82.8 102 50.0
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.9e-13 81.6 143 35.0
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.6e-12 78.6 65 60.0
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.6e-12 78.6 65 60.0
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 1.0e-11 75.9 582 22.5
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.5e-10 72.0 61 60.7
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 4.3e-10 70.5 515 21.7
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 2.8e-09 67.8 83 42.2
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 4.8e-09 67.0 84 38.1
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.4e-08 65.5 451 23.1
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 1.4e-08 65.5 98 41.8
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.8e-08 65.1 154 29.9
Solyc01g150163.1 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.5e-07 62.0 85 47.1
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-06 58.5 63 44.4
Actinidia17466 Actinidia chinensis HOM05D003578 ORTHO05D004021 6.4e-06 56.6 124 36.3
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 6.4e-06 56.6 552 22.5


User provided reference genes

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