Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 0.0e+00 2199.5 1357 100.0
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1341.3 1429 61.0
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1230.7 1441 59.1
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1192.2 1421 55.9
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1183.7 1523 53.6
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1170.2 1420 55.8
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1169.8 1492 55.4
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1164.8 1413 56.7
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1154.0 1413 55.2
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1142.1 1383 54.4
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1135.6 1407 54.4
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1134.0 1478 52.3
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1121.7 1444 53.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 0.0e+00 1105.9 1410 54.2
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 0.0e+00 1075.5 1454 53.0
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 7.1e-310 1067.8 1344 54.1
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.3e-307 1058.9 1507 49.0
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 5.6e-307 1058.1 1422 51.9
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 4.7e-306 1055.0 1435 52.6
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 1.0e-305 1053.9 1465 50.4
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.4e-305 1053.5 1459 52.8
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.4e-305 1053.5 1440 50.1
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.2e-304 1050.4 1521 50.2
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.2e-304 1050.4 1432 52.3
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.3e-303 1047.0 1434 53.5
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 7.0e-302 1041.2 1428 53.1
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 9.2e-302 1040.8 1517 49.6
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.0e-301 1039.6 1437 50.9
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 7.8e-301 1037.7 1429 50.7
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.3e-300 1036.2 1429 50.9
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.1e-299 1033.9 1497 49.6
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 5.6e-299 1031.6 1438 50.3
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.0e-296 1023.1 1449 50.8
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 4.9e-295 1018.5 1491 49.5
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 4.1e-294 1015.4 1432 50.2
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 4.3e-291 1005.4 1449 50.0
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 7.3e-291 1004.6 1435 53.0
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 3.6e-290 1002.3 1424 50.3
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 4.4e-288 995.3 1486 49.3
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 6.4e-287 991.5 1496 50.5
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 7.1e-286 988.0 1471 49.8
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 2.3e-284 983.0 1445 48.4
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 6.8e-281 971.5 1490 48.7
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.1e-275 954.1 1430 46.9
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 1.5e-275 953.7 1435 50.9
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 9.6e-275 951.0 1391 47.0
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 4.4e-272 942.2 1432 48.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 3.8e-271 939.1 1465 48.6
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 3.5e-269 932.6 1471 46.6
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.0e-268 931.0 1518 46.2
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.3e-268 929.9 1243 53.5
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 3.9e-268 929.1 1444 46.7
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 3.6e-266 922.5 1414 47.5
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 4.5e-264 915.6 1511 47.5
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 8.4e-263 911.4 1417 48.8
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.9e-262 910.2 1421 47.9
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 3.0e-260 902.9 1453 47.3
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.5e-259 900.6 1413 46.4
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 1.4e-254 884.0 1420 47.3
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.3e-252 877.5 1443 45.2
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.9e-252 875.9 1386 46.2
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 5.3e-249 865.5 1471 47.2
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 1.2e-248 864.4 1428 46.8
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 2.0e-248 863.6 1484 46.6
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 2.9e-247 859.8 717 69.6
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.5e-246 855.5 1502 44.2
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 3.3e-243 846.3 1246 50.2
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.6e-242 844.0 1324 45.7
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.1e-241 841.3 1209 49.8
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 3.0e-236 823.2 1492 41.3
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 1.1e-235 821.2 1486 41.3
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 1.1e-233 814.7 1640 40.6
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 9.1e-233 811.6 1485 44.4
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 3.8e-231 806.2 1432 45.5
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 7.9e-229 798.5 1454 43.8
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.3e-226 791.2 1501 41.4
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 1.3e-223 781.2 1530 42.0
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 3.2e-222 776.5 1483 44.6
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 8.0e-221 771.9 1480 44.9
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 8.8e-220 768.5 1353 48.0
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 1.5e-219 767.7 1516 42.7
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 3.5e-216 756.5 1497 42.5
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 4.5e-216 756.1 1481 48.1
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 3.1e-209 733.4 1393 42.1
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 1.2e-208 731.5 1477 42.8
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.5e-208 729.9 1442 44.2
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.5e-208 729.9 1442 44.2
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.9e-207 726.9 1455 44.5
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-205 721.5 1454 42.5
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 3.0e-204 716.8 1455 42.7
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 2.6e-203 713.8 1469 43.5
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.2e-202 710.7 899 52.1
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 7.3e-198 695.7 1434 40.9
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 5.6e-190 669.5 1391 46.7
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.8e-188 664.5 1465 40.8
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.7e-167 594.7 580 60.5
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 3.6e-165 587.0 1332 38.4
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 4.6e-160 570.1 1411 38.1
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.1e-152 544.7 1271 41.2
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.9e-150 538.1 1227 41.7
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 7.4e-150 536.2 1538 33.4
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 6.0e-144 516.5 1193 35.5
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 4.6e-128 463.8 827 40.6
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-123 449.1 597 50.6
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 5.0e-122 443.7 1505 32.3
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-119 435.6 1268 33.5
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 9.8e-94 349.7 1437 34.6
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 4.0e-79 301.2 828 35.9
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.5e-73 282.7 367 54.8
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.6e-72 278.1 1479 26.6
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 2.5e-65 255.4 1465 26.5
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 3.6e-64 251.5 1148 28.0
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 3.4e-62 245.0 1373 26.0
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.2e-60 238.4 1460 24.9
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 3.5e-59 235.0 261 58.2
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.5e-54 219.5 464 36.4
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 1.6e-43 183.0 418 40.0
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 4.0e-39 168.3 182 58.8
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 1.7e-37 162.9 310 39.7
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 9.3e-36 157.1 173 49.7
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 3.9e-34 151.8 353 39.1
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 2.8e-32 145.6 92 72.8
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 3.7e-32 145.2 303 44.2
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 6.9e-31 141.0 141 57.4
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.2e-28 132.1 274 43.8
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 8.2e-24 117.5 64 89.1
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.4e-23 115.9 253 42.7
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.4e-23 115.9 129 55.0
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 1.5e-22 113.2 134 47.8
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.7e-21 109.8 328 34.5
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.6e-19 101.7 69 71.0
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.3e-18 100.1 274 36.9
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.5e-17 95.9 64 65.6
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 1.1e-15 90.5 65 64.6
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 5.3e-15 88.2 310 25.5
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 9.0e-15 87.4 158 46.2
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.1e-12 80.5 50 74.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 1.1e-12 80.5 264 33.0
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 3.2e-12 79.0 106 50.9
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 4.2e-12 78.6 132 43.9
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 7.2e-12 77.8 79 51.9
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 7.2e-12 77.8 93 50.5
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 7.9e-11 74.3 50 64.0
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.1e-09 70.5 94 45.7
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.1e-09 70.5 52 61.5
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 2.5e-09 69.3 152 36.2
GSVIVG01012614001 Vitis vinifera HOM05D004594 ORTHO05D005225 4.3e-09 68.6 60 60.0
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 1.3e-08 67.0 57 57.9
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 5.3e-07 61.6 67 53.7
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 3.4e-06 58.9 90 41.1
Lsat_1_v5_gn_5_11101 Lactuca sativa HOM05D000912 ORTHO05D001232 5.9e-06 58.2 56 58.9
Lsat_1_v5_gn_4_138780 Lactuca sativa HOM05D067107 ORTHO05D005225 7.7e-06 57.8 56 58.9
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 7.7e-06 57.8 89 36.0


User provided reference genes

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