Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.4e-125 453.0 225 100.0
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.1e-78 296.2 166 85.5
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 4.4e-76 288.5 168 83.3
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.7e-75 286.6 165 83.6
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 5.4e-74 281.6 165 83.0
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 1.2e-73 280.4 165 82.4
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 1.2e-73 280.4 165 82.4
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.6e-73 280.0 164 81.7
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.7e-73 279.3 167 82.6
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 3.5e-73 278.9 165 81.2
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 4.6e-73 278.5 162 82.1
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 4.6e-73 278.5 164 80.5
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.7e-72 276.6 165 79.4
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 6.6e-72 274.6 167 79.6
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 3.3e-71 272.3 170 78.2
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 5.6e-71 271.6 165 80.0
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 7.3e-71 271.2 169 76.3
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.6e-70 270.0 166 79.5
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 8.1e-70 267.7 163 79.8
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.8e-69 266.5 162 79.6
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 5.2e-69 265.0 165 78.2
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 9.9e-68 260.8 170 76.5
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.3e-67 260.4 200 66.0
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.2e-67 259.6 162 77.2
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.4e-66 256.9 155 80.6
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.9e-66 256.5 154 81.2
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.4e-66 256.1 154 78.6
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.6e-65 253.4 164 74.4
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 6.0e-65 251.5 163 74.2
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 6.0e-65 251.5 164 73.2
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 7.8e-65 251.1 171 68.4
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.0e-64 250.8 168 71.4
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.0e-64 250.8 168 71.4
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.3e-64 250.4 162 77.2
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.0e-64 249.2 162 72.8
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 3.0e-64 249.2 162 72.8
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 5.1e-64 248.4 163 73.0
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 8.7e-64 247.7 181 69.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.1e-63 247.3 162 75.3
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 2.5e-63 246.1 163 73.0
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 4.3e-63 245.4 162 71.6
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 5.6e-63 245.0 166 74.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.3e-62 243.8 163 72.4
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 1.6e-62 243.4 167 72.5
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.6e-62 243.4 166 72.9
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.1e-61 240.7 150 78.7
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.4e-61 240.4 162 70.4
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.8e-61 240.0 162 70.4
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.8e-61 240.0 162 71.0
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.4e-61 239.6 166 71.1
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.0e-61 238.8 163 69.3
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 5.3e-61 238.4 162 69.8
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.2e-60 237.3 170 70.0
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.5e-60 236.9 162 71.6
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 4.4e-60 235.3 167 70.1
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 7.6e-60 234.6 166 70.5
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-59 233.4 167 69.5
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.7e-59 233.4 178 64.6
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 8.4e-59 231.1 165 67.9
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.1e-58 230.7 166 71.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.2e-57 227.3 162 67.9
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.6e-57 226.9 162 67.9
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 2.1e-57 226.5 154 72.1
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 2.7e-57 226.1 174 63.8
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.3e-56 223.8 165 65.5
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 5.1e-56 221.9 169 64.5
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 5.1e-56 221.9 169 64.5
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 8.7e-56 221.1 169 63.9
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 8.7e-56 221.1 169 63.9
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.1e-55 220.7 193 58.5
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.1e-55 220.7 166 67.5
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.5e-55 220.3 177 66.1
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 5.6e-55 218.4 168 63.1
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 5.6e-55 218.4 168 63.1
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 7.4e-55 218.0 166 63.9
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 7.4e-55 218.0 167 64.1
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.3e-54 217.2 170 63.5
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 2.1e-54 216.5 168 62.5
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.1e-54 216.5 190 58.9
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.1e-54 216.5 168 63.7
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 3.6e-54 215.7 168 62.5
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 4.8e-54 215.3 163 66.9
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 8.1e-54 214.5 168 62.5
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 1.1e-53 214.2 169 63.3
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 1.8e-53 213.4 128 82.8
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.8e-53 213.4 168 63.1
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.5e-52 210.3 191 58.6
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 3.4e-52 209.1 174 62.1
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.3e-51 207.2 171 62.6
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.5e-50 201.8 176 60.8
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 7.1e-50 201.4 174 59.2
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 9.3e-50 201.1 170 60.0
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 1.6e-49 200.3 162 62.3
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.7e-49 199.5 124 79.8
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 4.6e-49 198.7 167 58.1
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 8.7e-48 194.5 168 60.7
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.5e-44 183.7 118 72.0
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 2.5e-42 176.4 166 57.2
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.1e-37 159.5 168 45.2
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 4.1e-37 159.1 179 47.5
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-37 158.3 179 47.5
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.5e-36 157.1 179 48.0
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-33 146.0 182 46.2
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 4.6e-33 145.6 182 45.6
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-32 143.3 173 42.8
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 4.8e-30 135.6 107 57.9
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 3.1e-29 132.9 175 47.4
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-28 129.8 165 47.3
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.0e-27 127.9 112 59.8
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-27 127.5 177 41.8
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 5.0e-27 125.6 179 41.3
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 5.0e-27 125.6 116 56.0
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 6.5e-27 125.2 194 39.2
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 9.4e-26 121.3 180 38.3
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 7.9e-25 118.2 173 42.8
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.4e-24 117.5 147 38.8
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.0e-24 116.3 71 74.6
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.1e-23 114.4 117 53.8
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 1.3e-22 110.9 70 78.6
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 3.1e-21 106.3 165 38.2
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-21 105.9 164 37.2
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 6.9e-21 105.1 75 69.3
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.5e-20 104.0 151 36.4
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-20 103.2 174 35.6
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-19 101.3 141 39.7
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 2.2e-19 100.1 161 38.5
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 5.0e-19 99.0 71 76.1
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.5e-19 98.6 165 33.9
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 9.4e-18 94.7 169 36.1
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-16 90.5 149 36.9
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-16 90.5 116 44.8
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-16 90.1 172 34.3
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 8.8e-16 88.2 166 32.5
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.8e-16 88.2 153 32.7
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 1.5e-15 87.4 132 37.9
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.5e-15 87.4 108 44.4
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-15 86.3 167 32.3
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 5.7e-15 85.5 182 30.2
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-14 84.0 167 32.3
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-14 83.6 179 30.7
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-14 83.2 158 32.3
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-13 81.3 131 33.6
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 1.6e-12 77.4 41 87.8
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-12 77.0 146 33.6
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 7.7e-12 75.1 127 35.4
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-11 74.3 130 33.8
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 6.5e-11 72.0 188 28.7
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-10 70.5 180 30.0
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 9.4e-10 68.2 179 29.6
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-09 65.9 132 31.1
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 6.1e-09 65.5 105 37.1
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-07 60.1 127 29.9
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-07 59.3 64 48.4
Dinv01344 Davidia involucrata HOM05D065005 ORTHO05D005623 1.3e-06 57.8 31 80.6
Ah.12g060480 Amaranthus hybridus HOM05D002606 ORTHO05D015240 2.2e-06 57.0 36 72.2


User provided reference genes

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