Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 4.2e-119 431.4 222 100.0
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 1.4e-98 363.2 221 86.4
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 4.5e-97 358.2 222 83.3
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 5.9e-97 357.8 222 84.2
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 5.9e-97 357.8 222 83.3
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 5.9e-97 357.8 222 85.1
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.0e-96 357.1 222 84.7
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.0e-96 357.1 222 82.9
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 1.7e-96 356.3 221 84.2
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.2e-96 355.9 222 84.2
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 2.2e-96 355.9 222 85.6
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.2e-96 355.9 224 84.8
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 2.9e-96 355.5 221 82.8
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 3.8e-96 355.1 222 84.2
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 3.8e-96 355.1 222 83.3
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 3.8e-96 355.1 223 83.4
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.4e-95 353.2 222 81.5
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.4e-95 353.2 222 83.3
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 222 83.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 1.9e-95 352.8 222 82.4
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.5e-95 352.4 221 81.0
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.5e-95 351.3 222 82.9
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.6e-94 349.7 222 83.3
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 2.1e-94 349.4 223 82.5
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 4.6e-94 348.2 221 81.0
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 4.6e-94 348.2 221 81.4
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 7.9e-94 347.4 221 81.4
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.0e-93 347.1 230 78.7
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.8e-93 346.3 227 80.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.8e-93 346.3 221 80.5
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.8e-93 346.3 221 80.5
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 2.3e-93 345.9 219 80.8
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.0e-93 345.5 220 80.9
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 3.0e-93 345.5 221 81.4
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 3.9e-93 345.1 221 79.6
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 5.1e-93 344.7 221 81.4
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 5.1e-93 344.7 221 79.6
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 6.7e-93 344.4 223 81.2
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 8.8e-93 344.0 223 81.6
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.5e-92 343.2 222 79.3
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.5e-92 343.2 220 80.5
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 2.0e-92 342.8 223 79.8
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 2.5e-92 342.4 221 77.4
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 2.5e-92 342.4 223 81.6
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 2.5e-92 342.4 223 79.8
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 2.5e-92 342.4 223 80.7
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.3e-92 342.0 223 81.2
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 4.3e-92 341.7 221 79.2
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 4.3e-92 341.7 221 79.2
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 4.3e-92 341.7 218 82.1
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 4.3e-92 341.7 221 80.5
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 5.7e-92 341.3 222 78.8
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 7.4e-92 340.9 223 80.7
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 9.7e-92 340.5 223 79.4
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 9.7e-92 340.5 223 79.8
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.3e-91 340.1 220 80.5
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.3e-91 340.1 223 79.8
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 3.7e-91 338.6 223 78.0
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 3.7e-91 338.6 221 77.4
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 3.7e-91 338.6 221 77.4
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 3.7e-91 338.6 221 77.4
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 3.7e-91 338.6 223 78.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 4.8e-91 338.2 220 78.6
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 6.3e-91 337.8 219 79.9
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 6.3e-91 337.8 221 77.4
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 8.2e-91 337.4 223 81.2
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 8.2e-91 337.4 223 81.2
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 8.2e-91 337.4 217 82.9
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.1e-90 337.0 220 77.7
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.1e-90 337.0 220 77.7
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 1.1e-90 337.0 223 77.1
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.1e-90 337.0 224 76.8
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 1.1e-90 337.0 223 78.5
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.1e-90 337.0 223 79.8
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.4e-90 336.7 221 77.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.8e-90 336.3 223 79.8
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.8e-90 336.3 221 76.9
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.8e-90 336.3 220 78.2
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.8e-90 336.3 221 77.4
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.8e-90 336.3 220 78.6
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 1.8e-90 336.3 222 77.5
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.8e-90 336.3 222 79.3
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.4e-90 335.9 220 77.7
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.4e-90 335.9 217 82.0
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.4e-90 335.9 222 77.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.4e-90 335.9 224 78.6
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 3.1e-90 335.5 221 76.9
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 3.1e-90 335.5 221 77.4
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 3.1e-90 335.5 223 80.3
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 3.1e-90 335.5 221 78.7
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 3.1e-90 335.5 223 79.4
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 5.3e-90 334.7 223 78.9
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.3e-90 334.7 223 77.1
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 6.9e-90 334.3 220 77.7
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.9e-90 334.3 222 76.6
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 6.9e-90 334.3 223 78.9
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 9.1e-90 334.0 223 77.1
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.2e-89 333.6 223 77.6
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.2e-89 333.6 221 76.0
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.2e-89 333.6 221 78.3
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.2e-89 333.6 223 77.6
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 2.0e-89 332.8 223 77.1
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.5e-89 331.6 221 76.9
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 4.5e-89 331.6 217 80.6
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 4.5e-89 331.6 220 78.2
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 4.5e-89 331.6 223 77.6
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 4.5e-89 331.6 221 76.9
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 5.9e-89 331.3 220 75.5
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 5.9e-89 331.3 223 77.6
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.9e-89 331.3 223 77.1
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 7.7e-89 330.9 222 78.4
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 7.7e-89 330.9 223 77.1
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.7e-88 329.7 223 78.0
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.2e-88 329.3 221 76.0
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 5.0e-88 328.2 221 76.9
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.0e-88 328.2 220 76.8
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 6.5e-88 327.8 222 76.1
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 6.5e-88 327.8 222 76.1
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.8e-85 319.7 222 75.2
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 3.7e-83 312.0 223 73.5
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 8.2e-83 310.8 202 79.2
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 7.0e-82 307.8 183 79.8
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.0e-81 306.2 165 88.5
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 4.2e-79 298.5 225 71.1
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 2.6e-76 289.3 192 75.5
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.8e-75 285.8 163 82.2
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.4e-74 282.7 195 75.9
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.2e-70 270.4 188 69.7
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.1e-70 269.6 162 78.4
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.1e-70 268.1 165 79.4
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.0e-69 267.3 192 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 6.8e-69 264.6 167 74.3
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 1.5e-60 236.9 221 63.8
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 9.2e-58 227.6 218 57.8
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.5e-52 210.3 221 55.2
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 3.9e-48 195.7 223 54.3
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 6.2e-46 188.3 191 53.9
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 8.0e-46 188.0 198 51.5
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 4.4e-44 182.2 150 58.0
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 5.8e-44 181.8 127 71.7
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.7e-40 170.2 143 71.3
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.1e-29 134.4 108 73.1
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-15 87.8 99 52.5
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.1e-15 87.8 99 52.5
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.5e-07 60.8 61 50.8


User provided reference genes

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