Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.4e-169 599.7 356 100.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.8e-109 399.4 346 67.6
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.4e-108 396.4 345 71.6
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 4.1e-108 395.6 346 68.2
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 5.3e-108 395.2 345 67.5
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.2e-107 394.0 355 72.4
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.5e-107 392.1 345 67.2
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 5.9e-107 391.7 344 67.7
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 7.7e-107 391.3 345 66.4
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.3e-106 390.6 345 65.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 6.5e-106 388.3 335 67.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 6.5e-106 388.3 362 63.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.5e-106 388.3 345 73.3
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 7.2e-105 384.8 345 65.8
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.2e-104 384.0 345 66.4
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.6e-104 383.6 345 67.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 3.6e-104 382.5 345 64.6
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.1e-104 381.7 342 66.4
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.0e-103 380.9 345 66.4
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.0e-103 380.9 345 66.4
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.0e-103 380.9 345 64.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 3.0e-103 379.4 347 73.5
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.0e-103 379.4 345 66.1
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 6.7e-103 378.3 345 64.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.8e-103 377.9 345 65.8
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.1e-102 377.5 345 69.0
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.5e-102 377.1 345 65.8
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 2.0e-102 376.7 347 65.7
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 3.3e-102 375.9 345 64.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 4.4e-102 375.6 345 63.5
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.7e-102 375.2 337 64.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 9.7e-102 374.4 345 63.2
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-101 374.0 345 73.0
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.7e-101 372.5 341 64.8
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 3.7e-101 372.5 347 63.4
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.1e-100 370.9 345 62.9
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.1e-100 370.9 371 61.2
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.8e-100 370.2 342 64.3
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.4e-100 369.8 345 62.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 3.1e-100 369.4 345 64.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 9.1e-100 367.9 345 63.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 5.9e-99 365.2 345 61.4
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.8e-98 362.5 345 70.4
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 6.5e-98 361.7 345 72.5
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.9e-97 360.1 345 61.2
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.9e-97 360.1 345 70.1
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 4.2e-97 359.0 335 63.6
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 7.2e-97 358.2 345 61.7
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.4e-97 357.8 345 72.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 9.4e-97 357.8 345 60.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.1e-96 356.7 347 59.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.7e-96 356.3 342 62.6
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 3.6e-96 355.9 345 62.3
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.6e-96 355.9 345 60.0
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 4.7e-96 355.5 345 70.7
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 8.0e-96 354.8 345 60.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.0e-95 354.4 345 60.3
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.3e-95 353.2 345 60.6
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 6.7e-95 351.7 345 60.6
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.3e-94 349.4 341 67.4
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 4.4e-94 349.0 340 64.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.4e-94 349.0 345 67.5
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 5.7e-94 348.6 345 59.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 7.5e-94 348.2 345 64.9
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.7e-94 347.8 319 65.5
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.7e-93 347.1 345 60.0
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.4e-92 343.2 340 60.0
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.1e-92 342.4 340 67.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 7.0e-92 341.7 343 60.3
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-91 340.9 343 60.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.2e-91 340.9 345 58.3
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-91 340.5 315 63.2
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.7e-90 337.0 345 65.5
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.1e-89 334.3 345 66.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.1e-89 334.3 345 66.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.9e-89 333.6 319 68.7
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.9e-89 333.6 322 63.4
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 4.2e-89 332.4 394 59.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 5.5e-89 332.0 337 66.2
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 9.4e-89 331.3 345 65.8
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 9.4e-89 331.3 345 62.9
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.2e-88 330.9 345 59.7
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 4.7e-88 328.9 331 59.5
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-86 323.6 328 59.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.8e-86 321.2 338 65.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 4.8e-85 318.9 345 64.9
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.1e-84 317.8 331 57.4
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 5.4e-84 315.5 345 64.1
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.2e-83 314.3 367 60.5
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.2e-82 310.1 346 55.5
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 5.0e-82 308.9 345 63.8
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.9e-81 307.0 256 67.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.9e-81 307.0 345 62.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 8.0e-80 301.6 345 60.3
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.4e-79 300.8 319 58.0
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.0e-79 299.7 294 62.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.5e-78 297.4 345 52.8
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.0e-78 297.0 345 54.2
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 3.7e-77 292.7 346 62.4
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.8e-76 290.4 334 52.7
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.2e-75 287.7 338 58.0
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.3e-74 284.3 349 50.7
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.9e-73 280.4 323 53.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.5e-73 278.1 338 50.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.5e-73 278.1 339 49.6
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.8e-71 273.9 256 60.9
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.8e-71 273.9 336 49.7
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.0e-71 272.7 343 51.0
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 4.0e-71 272.7 323 53.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-70 271.2 310 53.2
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.5e-70 270.8 308 53.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.6e-70 270.0 340 52.4
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.4e-70 269.2 348 56.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 5.7e-70 268.9 322 51.6
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 5.7e-70 268.9 322 51.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.7e-70 268.9 373 49.6
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.2e-69 266.9 331 59.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.9e-69 266.5 256 59.8
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 3.7e-69 266.2 322 50.9
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.4e-68 263.5 328 50.9
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.2e-68 263.1 307 53.7
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 3.2e-68 263.1 322 50.3
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 9.2e-68 261.5 230 65.2
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.8e-67 258.5 336 49.1
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 5.0e-66 255.8 230 62.2
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.5e-65 254.2 313 60.7
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.5e-65 253.4 310 51.0
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.5e-65 253.4 345 57.4
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.5e-65 251.5 308 51.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.8e-63 247.3 341 48.1
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.6e-62 243.4 333 58.0
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.2e-61 240.4 310 49.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 2.2e-61 240.4 307 50.8
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 4.9e-61 239.2 331 57.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 3.2e-60 236.5 305 49.5
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 2.0e-59 233.8 305 49.5
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 8.6e-58 228.4 253 54.9
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.9e-57 227.3 292 52.1
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 8.1e-56 221.9 308 48.4
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.4e-54 216.1 249 55.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 5.8e-54 215.7 257 52.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.8e-54 214.9 340 41.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 6.4e-53 212.2 248 54.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.4e-52 210.3 334 43.4
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 7.1e-52 208.8 345 52.8
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 9.2e-52 208.4 260 52.3
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-51 207.6 234 55.6
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.1e-51 207.2 267 51.3
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 8.1e-48 195.3 319 42.6
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.3e-47 193.7 233 48.9
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 6.8e-47 192.2 284 45.1
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 7.8e-43 178.7 335 43.0
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.1e-41 174.9 350 35.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.6e-38 162.2 158 77.2
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 8.4e-37 158.7 138 70.3
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.9e-36 157.5 290 40.3
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-34 151.0 166 54.2
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.7e-34 151.0 343 35.0
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 3.0e-34 150.2 188 49.5
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.5e-33 147.9 273 42.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 7.3e-33 145.6 178 49.4
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.0e-30 137.5 176 50.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.4e-29 132.5 288 37.5
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 5.4e-28 129.4 156 52.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 3.5e-19 100.1 264 33.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 4.0e-15 86.7 267 33.3
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 2.6e-14 84.0 55 85.5
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 7.6e-14 82.4 145 44.8
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 4.9e-13 79.7 54 81.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 6.5e-13 79.3 267 43.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.8e-10 71.2 255 29.4
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.8e-10 71.2 255 29.4
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.4e-06 57.0 90 46.7
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 7.6e-06 55.8 41 73.2


User provided reference genes

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