Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.4e-66 253.8 120 100.0
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.0e-28 127.5 68 80.9
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-27 125.9 68 79.4
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.2e-25 118.6 64 81.2
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 5.5e-25 117.9 79 69.6
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.6e-24 116.3 101 57.4
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.6e-24 116.3 101 57.4
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.0e-23 113.6 66 72.7
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 2.3e-23 112.5 68 72.1
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.0e-23 111.7 65 72.3
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 6.7e-23 110.9 65 72.3
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.7e-23 110.9 86 59.3
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 8.8e-23 110.5 86 59.3
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.2e-22 110.2 68 67.6
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 4.4e-22 108.2 68 70.6
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 5.7e-22 107.8 68 69.1
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 5.7e-22 107.8 86 58.1
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 9.7e-22 107.1 68 69.1
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 9.7e-22 107.1 65 70.8
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 9.7e-22 107.1 68 66.2
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.7e-21 106.3 78 64.1
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.8e-21 104.8 65 67.7
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 6.3e-21 104.4 68 64.7
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 8.3e-21 104.0 72 65.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.1e-20 103.6 79 60.8
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.1e-20 103.6 68 66.2
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.4e-20 103.2 75 61.3
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.4e-20 103.2 79 57.0
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.4e-20 102.4 68 64.7
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 2.4e-20 102.4 68 64.7
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 4.1e-20 101.7 86 52.3
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 7.0e-20 100.9 68 60.3
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 7.0e-20 100.9 86 53.5
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 7.0e-20 100.9 68 66.2
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-19 100.1 68 63.2
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.2e-19 100.1 68 63.2
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-19 99.8 79 59.5
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-19 99.8 68 63.2
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.6e-19 99.8 62 71.0
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.6e-19 99.8 68 63.2
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.0e-19 99.4 66 65.2
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.0e-19 99.4 71 60.6
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.0e-19 99.4 86 50.0
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.7e-19 99.0 68 61.8
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 2.7e-19 99.0 68 63.2
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.5e-19 98.6 86 51.2
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 3.5e-19 98.6 86 50.0
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 3.5e-19 98.6 66 65.2
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 3.5e-19 98.6 68 60.3
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 3.5e-19 98.6 86 50.0
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.5e-19 98.2 68 61.8
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.9e-19 97.8 86 52.3
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 5.9e-19 97.8 86 52.3
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 5.9e-19 97.8 86 52.3
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 5.9e-19 97.8 86 52.3
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 5.9e-19 97.8 68 60.3
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.7e-19 97.4 68 63.2
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 7.7e-19 97.4 79 54.4
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 7.7e-19 97.4 79 54.4
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 7.7e-19 97.4 68 61.8
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.0e-18 97.1 68 64.7
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.0e-18 97.1 68 60.3
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.3e-18 96.7 86 50.0
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.3e-18 96.7 68 58.8
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 2.2e-18 95.9 68 61.8
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.2e-18 95.9 68 63.2
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 2.2e-18 95.9 68 60.3
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.9e-18 95.5 86 51.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.9e-18 95.5 86 51.2
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.9e-18 95.5 83 55.4
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 3.8e-18 95.1 68 61.8
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.8e-18 95.1 79 54.4
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 5.0e-18 94.7 59 66.1
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 5.0e-18 94.7 83 54.2
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 6.5e-18 94.4 66 63.6
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 6.5e-18 94.4 86 51.2
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 6.5e-18 94.4 66 63.6
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 8.5e-18 94.0 66 63.6
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 8.5e-18 94.0 66 63.6
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 8.5e-18 94.0 76 55.3
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 8.5e-18 94.0 65 63.1
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.1e-17 93.6 86 48.8
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.1e-17 93.6 66 65.2
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.1e-17 93.6 67 59.7
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.5e-17 93.2 68 57.4
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.9e-17 92.8 64 59.4
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.9e-17 92.8 79 54.4
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.5e-17 92.4 79 55.7
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 4.2e-17 91.7 63 61.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 4.2e-17 91.7 68 61.8
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 5.5e-17 91.3 66 57.6
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 5.5e-17 91.3 62 64.5
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 7.2e-17 90.9 58 62.1
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 7.2e-17 90.9 68 57.4
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 9.4e-17 90.5 68 57.4
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 9.4e-17 90.5 59 67.8
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.1e-16 89.4 59 62.7
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.7e-16 89.0 48 79.2
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.7e-16 88.2 68 58.8
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 4.7e-16 88.2 68 57.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 6.1e-16 87.8 68 58.8
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 6.1e-16 87.8 75 52.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 8.0e-16 87.4 79 54.4
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.0e-15 87.0 68 57.4
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.0e-15 87.0 79 50.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.4e-15 86.7 68 57.4
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.3e-15 85.9 59 62.7
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.3e-15 85.9 68 52.9
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.0e-15 85.1 62 62.9
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.5e-14 83.2 68 54.4
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.6e-14 82.4 60 58.3
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 3.4e-14 82.0 74 50.0
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 7.5e-14 80.9 79 51.9
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 7.5e-14 80.9 68 52.9
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-13 79.7 54 72.2
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 2.8e-13 79.0 59 57.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 3.7e-13 78.6 68 51.5
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.7e-13 78.6 54 70.4
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 4.8e-13 78.2 61 55.7
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.4e-12 76.6 62 62.9
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.8e-12 76.3 67 47.8
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.8e-12 76.3 67 47.8
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 4.1e-12 75.1 67 46.3
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 7.0e-12 74.3 80 47.5
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.6e-11 73.2 55 54.5
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-11 72.0 70 54.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.0e-10 70.5 79 39.2
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-10 70.5 50 70.0
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 5.0e-10 68.2 79 39.2
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 2.5e-09 65.9 47 63.8
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 2.5e-09 65.9 47 63.8
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 3.3e-09 65.5 43 62.8
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 9.5e-09 63.9 49 57.1
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 9.5e-09 63.9 43 60.5
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 3.6e-08 62.0 47 61.7
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.8e-07 59.7 103 35.0
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 5.2e-07 58.2 47 55.3
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.5e-06 56.6 75 41.3


User provided reference genes

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