Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 7.7e-52 206.8 102 100.0
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 9.8e-23 110.2 60 88.3
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 2.2e-22 109.0 60 86.7
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.8e-22 108.6 60 86.7
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.8e-22 108.6 60 86.7
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 6.3e-22 107.5 86 65.1
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 1.1e-21 106.7 60 86.7
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 5.4e-21 104.4 60 86.7
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 9.2e-21 103.6 60 88.3
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 9.2e-21 103.6 60 83.3
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.5e-20 101.3 75 74.7
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 5.9e-20 100.9 56 87.5
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 5.9e-20 100.9 70 75.7
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 7.8e-20 100.5 85 65.9
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 7.8e-20 100.5 66 81.8
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 7.8e-20 100.5 68 76.5
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 1.0e-19 100.1 60 83.3
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 1.0e-19 100.1 60 83.3
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.0e-19 100.1 57 86.0
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.0e-19 100.1 60 86.7
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.0e-19 100.1 60 86.7
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.0e-19 100.1 60 86.7
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.3e-19 99.8 56 85.7
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.3e-19 99.8 56 85.7
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 1.7e-19 99.4 57 82.5
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 1.7e-19 99.4 60 86.7
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 2.3e-19 99.0 56 83.9
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 2.3e-19 99.0 60 83.3
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 2.9e-19 98.6 60 85.0
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 3.8e-19 98.2 60 81.7
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 5.0e-19 97.8 60 85.0
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 5.0e-19 97.8 60 81.7
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 5.0e-19 97.8 60 81.7
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 6.6e-19 97.4 56 82.1
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 6.6e-19 97.4 60 85.0
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 6.6e-19 97.4 60 85.0
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 6.6e-19 97.4 60 85.0
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 8.6e-19 97.1 60 85.0
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 8.6e-19 97.1 60 80.0
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 8.6e-19 97.1 60 80.0
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 8.6e-19 97.1 60 81.7
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 8.6e-19 97.1 89 62.9
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.1e-18 96.7 66 74.2
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 1.1e-18 96.7 66 77.3
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 1.1e-18 96.7 60 83.3
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.5e-18 96.3 60 81.7
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 81.7
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.9e-18 95.9 69 72.5
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 81.7
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 81.7
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 1.9e-18 95.9 60 80.0
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 2.5e-18 95.5 98 57.1
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 4.3e-18 94.7 56 87.5
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 80.0
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 80.0
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 80.0
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 5.6e-18 94.4 60 78.3
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 7.3e-18 94.0 60 80.0
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 9.5e-18 93.6 56 87.5
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 1.2e-17 93.2 60 78.3
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 1.6e-17 92.8 80 65.0
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 2.1e-17 92.4 60 76.7
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 2.8e-17 92.0 60 78.3
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 3.6e-17 91.7 60 78.3
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 6.1e-17 90.9 78 65.4
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 6.1e-17 90.9 59 78.0
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.0e-16 90.1 59 76.3
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 4.0e-16 88.2 56 75.0
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 6.8e-16 87.4 50 82.0
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 4.4e-15 84.7 62 74.2
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 5.8e-15 84.3 55 74.5
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 7.5e-15 84.0 59 72.9
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 9.8e-15 83.6 62 74.2
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 9.8e-15 83.6 62 71.0
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 9.8e-15 83.6 62 71.0
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.3e-14 83.2 62 71.0
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.3e-14 83.2 62 71.0
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 1.3e-14 83.2 75 62.7
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 1.7e-14 82.8 59 72.9
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 1.7e-14 82.8 59 72.9
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.2e-14 82.4 62 72.6
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.2e-14 82.4 62 72.6
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 2.2e-14 82.4 54 70.4
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.9e-14 82.0 59 72.9
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 3.7e-14 81.6 56 64.3
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 3.7e-14 81.6 62 72.6
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-13 80.1 56 67.9
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 1.1e-13 80.1 62 69.4
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 1.4e-13 79.7 57 70.2
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.4e-13 79.7 62 69.4
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.4e-13 79.7 62 69.4
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.4e-13 79.7 62 69.4
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.4e-13 79.7 62 69.4
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.4e-13 77.8 48 83.3
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 1.2e-12 76.6 56 67.9
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 3.0e-11 72.0 47 78.7
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 3.9e-11 71.6 52 71.2
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 4.3e-10 68.2 60 53.3
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 9.5e-10 67.0 61 55.7
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 9.5e-10 67.0 64 57.8
Aqoxy6G00317 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 3.6e-09 65.1 38 84.2
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 6.2e-09 64.3 58 63.8
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 8.0e-09 63.9 84 50.0
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 2.3e-08 62.4 45 66.7
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 2.3e-08 62.4 45 66.7
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 3.1e-08 62.0 45 66.7
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 4.0e-08 61.6 45 66.7
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 4.0e-08 61.6 48 66.7
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.5e-07 59.7 48 60.4
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.5e-07 59.7 45 64.4
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.0e-07 59.3 43 67.4
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 3.4e-07 58.5 56 57.1
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 3.4e-07 58.5 51 58.8
SMO196G0139 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 3.4e-07 58.5 52 51.9
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.4e-07 58.2 52 57.7
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 5.8e-07 57.8 54 55.6
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 5.8e-07 57.8 47 61.7
GSVIVG01003736001 Vitis vinifera HOM05D047109 ORTHO05D438745 9.8e-07 57.0 30 90.0
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.3e-06 56.6 54 53.7
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 4.9e-06 54.7 45 60.0


User provided reference genes

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