Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.9e-236 822.4 496 100.0
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 8.2e-83 312.0 155 96.8
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 9.1e-74 282.0 188 76.1
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.6e-73 281.2 188 76.1
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.7e-73 280.4 188 76.1
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 7.7e-73 278.9 192 73.4
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 7.7e-73 278.9 188 75.0
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.0e-72 278.5 188 75.0
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-72 277.7 195 72.8
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.7e-72 277.7 188 75.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.7e-72 277.7 188 74.5
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.7e-72 277.7 188 75.0
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 2.9e-72 276.9 188 74.5
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.9e-72 276.9 195 72.3
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.0e-72 276.2 188 73.9
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 6.5e-72 275.8 188 73.4
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.5e-72 275.8 188 74.5
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.5e-71 274.6 188 73.9
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.9e-71 274.2 188 73.9
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.9e-71 274.2 188 73.9
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 2.5e-71 273.9 188 73.9
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 4.2e-71 273.1 188 73.9
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.5e-71 272.7 188 73.4
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 7.2e-71 272.3 188 73.4
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 7.2e-71 272.3 188 73.4
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 7.2e-71 272.3 188 73.4
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 9.5e-71 271.9 188 72.9
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.2e-70 271.6 188 72.9
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.2e-70 271.6 188 72.9
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.2e-70 271.6 188 73.4
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-70 271.2 188 73.4
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.6e-70 271.2 188 73.4
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.6e-70 271.2 188 73.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.8e-70 270.4 188 73.4
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.8e-70 270.4 188 73.4
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 3.6e-70 270.0 188 72.9
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 4.7e-70 269.6 188 71.8
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 4.7e-70 269.6 188 71.8
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 4.7e-70 269.6 188 73.4
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 4.7e-70 269.6 188 73.4
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 4.7e-70 269.6 188 73.4
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.1e-70 269.2 188 72.3
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 6.1e-70 269.2 188 72.9
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 8.0e-70 268.9 188 72.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 8.0e-70 268.9 188 72.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 8.0e-70 268.9 188 72.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.0e-69 268.5 188 72.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.0e-69 268.5 188 72.9
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.4e-69 268.1 187 72.2
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.8e-69 267.7 188 71.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 2.3e-69 267.3 188 71.8
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 3.0e-69 266.9 190 73.2
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 3.0e-69 266.9 190 73.2
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 4.0e-69 266.5 188 73.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.8e-69 265.8 188 72.3
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 6.8e-69 265.8 188 72.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.5e-68 264.6 188 71.8
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.5e-68 264.6 188 71.8
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 2.0e-68 264.2 188 71.8
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 2.0e-68 264.2 188 71.3
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.4e-68 263.5 188 72.3
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 3.4e-68 263.5 188 70.2
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 4.4e-68 263.1 186 70.4
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 5.7e-68 262.7 186 70.4
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 7.5e-68 262.3 188 70.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 9.8e-68 261.9 188 70.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 9.8e-68 261.9 188 69.1
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.3e-67 261.5 188 69.1
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.3e-67 261.5 180 73.3
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.3e-67 261.5 188 69.1
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.3e-67 261.5 188 70.7
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 2.2e-67 260.8 188 71.8
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.2e-67 260.8 185 71.9
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.2e-67 260.8 188 70.2
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.8e-67 260.4 188 70.2
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.8e-67 260.4 188 70.2
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 2.8e-67 260.4 186 69.9
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 3.7e-67 260.0 188 69.1
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.7e-67 260.0 186 69.4
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.7e-67 260.0 186 69.4
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.7e-67 260.0 186 69.4
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.9e-67 259.6 188 71.3
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 4.9e-67 259.6 188 71.3
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 6.3e-67 259.2 188 68.1
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 6.3e-67 259.2 188 68.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 8.3e-67 258.8 188 70.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.1e-66 258.5 188 69.7
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.1e-66 258.5 188 68.6
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.4e-66 258.1 188 70.7
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.4e-66 258.1 188 70.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.8e-66 257.7 188 68.6
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 2.4e-66 257.3 188 70.2
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 4.1e-66 256.5 188 69.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 4.1e-66 256.5 188 69.7
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.2e-65 255.0 189 69.3
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.2e-65 255.0 188 70.2
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.6e-65 254.6 168 75.6
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.6e-65 254.6 191 68.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 2.7e-65 253.8 184 71.7
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.7e-65 253.8 188 68.1
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 3.5e-65 253.4 188 69.1
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.5e-65 253.4 188 69.1
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 4.5e-65 253.1 188 68.6
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 4.5e-65 253.1 188 69.1
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 5.9e-65 252.7 188 68.1
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.3e-64 250.8 188 68.1
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.3e-64 250.8 188 67.0
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.0e-64 249.6 188 68.1
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 6.6e-64 249.2 188 67.6
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 8.6e-64 248.8 188 67.0
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 5.6e-63 246.1 180 68.9
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.2e-62 245.0 203 65.0
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.8e-62 243.8 188 66.0
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.8e-62 243.8 188 66.0
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.8e-61 241.1 188 65.4
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.8e-61 241.1 188 66.0
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 4.0e-61 240.0 188 66.5
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 4.0e-61 240.0 189 67.2
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 8.9e-61 238.8 188 63.8
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.5e-60 238.0 189 67.2
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.5e-60 238.0 189 66.7
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.5e-60 238.0 188 64.9
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.0e-60 237.7 190 65.8
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.0e-60 237.7 189 66.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 2.6e-60 237.3 166 71.7
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.6e-60 237.3 174 69.5
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.8e-60 235.3 188 64.4
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.3e-59 235.0 190 64.2
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 8.3e-59 232.3 176 69.3
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.6e-57 228.0 169 66.3
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 3.9e-56 223.4 188 60.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 9.5e-55 218.8 188 59.6
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.2e-54 218.4 188 59.0
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.7e-54 216.5 179 63.7
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 3.1e-53 213.8 179 62.0
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.2e-52 211.8 187 57.8
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 2.6e-52 210.7 188 54.8
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 3.4e-52 210.3 187 57.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 4.4e-52 209.9 189 56.6
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.9e-51 207.2 188 57.4
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.9e-51 207.2 188 57.4
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.4e-50 204.9 154 68.8
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 4.1e-50 203.4 187 56.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.3e-45 187.6 163 62.0
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.2e-44 185.3 188 49.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-42 178.3 155 62.6
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 6.0e-41 172.9 177 50.8
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 7.8e-41 172.6 165 61.2
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.4e-37 161.8 84 91.7
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.4e-37 161.8 84 90.5
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 3.5e-33 147.1 187 42.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 8.7e-32 142.5 84 78.6
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 9.6e-31 139.0 73 90.4
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 5.8e-28 129.8 73 84.9
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.9e-27 127.5 143 54.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 8.7e-24 115.9 74 73.0
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.3e-22 112.1 64 78.1
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 4.0e-21 107.1 127 48.8
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 5.3e-21 106.7 80 68.8
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.9e-10 71.6 35 94.3
Thecc.04G283200 Theobroma cacao HOM05D000865 ORTHO05D000739 1.1e-07 62.4 140 40.0


User provided reference genes

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