Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.2e-277 959.1 481 100.0
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.4e-159 566.2 377 80.4
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 3.1e-119 433.0 377 63.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.2e-115 421.0 375 63.2
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 6.7e-114 415.2 376 63.6
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 2.6e-110 403.3 389 58.6
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 3.4e-110 402.9 377 60.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 1.1e-108 397.9 384 59.6
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 4.2e-108 396.0 375 60.8
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 4.2e-108 396.0 376 61.4
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 7.9e-107 391.7 376 61.4
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 7.9e-107 391.7 379 59.6
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.4e-106 391.0 379 60.9
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 1.8e-106 390.6 381 58.8
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 3.0e-106 389.8 376 59.0
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 6.7e-106 388.7 377 58.6
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 9.7e-105 384.8 376 60.6
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.3e-104 384.4 417 55.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.7e-104 384.0 417 55.9
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 2.8e-104 383.3 377 58.4
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 2.8e-104 383.3 380 59.2
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.8e-104 382.5 377 58.9
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 6.3e-104 382.1 377 58.4
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 8.2e-104 381.7 374 58.8
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 1.1e-103 381.3 376 58.5
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 3.1e-103 379.8 374 59.9
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 9.1e-103 378.3 377 57.6
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 9.1e-103 378.3 377 57.3
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 5.9e-102 375.6 390 56.7
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 5.0e-101 372.5 379 55.9
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 5.5e-100 369.0 391 56.3
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.6e-99 367.5 309 66.3
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 1.4e-98 364.4 377 55.4
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 1.8e-98 364.0 377 57.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 3.0e-98 363.2 380 56.6
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 5.2e-98 362.5 376 57.2
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 4.4e-97 359.4 373 56.0
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 9.7e-97 358.2 379 55.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 2.8e-96 356.7 376 54.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 2.8e-96 356.7 401 53.9
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 4.8e-96 355.9 377 54.9
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 3.1e-95 353.2 374 53.2
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 9.1e-95 351.7 375 56.0
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 1.2e-94 351.3 377 55.7
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 2.0e-94 350.5 327 60.9
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 2.0e-94 350.5 375 56.0
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 2.6e-94 350.1 375 54.7
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 2.2e-93 347.1 375 55.5
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 3.8e-93 346.3 415 51.8
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 6.5e-93 345.5 401 52.9
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 6.5e-93 345.5 401 52.9
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.5e-92 344.4 374 54.8
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 2.5e-92 343.6 379 52.0
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 2.1e-91 340.5 377 55.2
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 3.6e-91 339.7 376 52.4
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 3.6e-91 339.7 376 53.2
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 8.0e-91 338.6 378 53.4
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 2.3e-90 337.0 377 54.4
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 5.2e-90 335.9 378 53.7
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 6.8e-90 335.5 386 52.8
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 5.7e-89 332.4 376 54.0
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 2.8e-88 330.1 376 53.7
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 3.7e-88 329.7 385 53.5
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 6.3e-88 328.9 372 53.0
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 9.1e-87 325.1 374 52.1
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.2e-86 324.7 385 52.2
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 1.0e-85 321.6 374 52.1
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 1.7e-85 320.9 379 50.1
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 2.9e-85 320.1 374 52.4
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 5.0e-85 319.3 401 50.1
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 8.5e-85 318.5 380 51.6
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 1.9e-84 317.4 380 51.3
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 3.2e-84 316.6 379 50.9
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 4.2e-84 316.2 380 50.3
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 5.5e-84 315.8 375 51.2
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 5.5e-84 315.8 375 51.5
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 7.2e-84 315.5 379 51.2
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 7.2e-84 315.5 376 51.1
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 7.2e-84 315.5 257 65.4
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 1.2e-83 314.7 379 51.2
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 2.1e-83 313.9 396 49.2
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 4.7e-83 312.8 389 49.4
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 6.1e-83 312.4 385 50.1
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 1.0e-82 311.6 375 51.7
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 1.8e-82 310.8 378 50.5
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 1.8e-82 310.8 380 50.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 4.0e-82 309.7 375 51.5
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 3.4e-81 306.6 375 50.7
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 3.4e-81 306.6 380 49.5
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 1.3e-80 304.7 371 50.1
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 2.8e-80 303.5 384 49.7
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 3.5e-78 296.6 388 49.0
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 3.8e-77 293.1 388 47.9
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 7.2e-76 288.9 346 49.7
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 1.2e-75 288.1 375 47.5
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.1e-71 273.1 182 80.2
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 1.0e-69 268.5 385 45.7
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.7e-69 267.7 317 53.0
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 1.7e-64 251.1 373 44.2
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.7e-64 251.1 394 44.2
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.2e-62 245.0 360 42.5
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.8e-62 242.3 261 53.3
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 5.2e-58 229.6 243 53.5
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.6e-54 218.0 239 52.7
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 2.1e-54 217.6 225 52.9
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 3.1e-50 203.8 241 50.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 9.9e-49 198.7 258 48.1
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.6e-46 191.4 239 48.1
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.7e-45 188.0 352 38.1
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.3e-45 187.6 352 38.1
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 5.1e-45 186.4 352 38.4
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-43 181.8 323 39.9
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 5.1e-37 159.8 264 44.3
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 8.1e-35 152.5 106 73.6
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 5.8e-33 146.4 270 37.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.1e-28 132.1 98 70.4
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.5e-28 131.7 106 67.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 5.6e-28 129.8 249 34.5
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.3e-21 107.8 117 53.0
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 6.9e-18 96.3 171 43.3
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.0e-17 94.7 57 82.5
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 7.6e-17 92.8 54 85.2
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.9e-16 90.9 55 81.8
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 2.9e-16 90.9 57 80.7
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-13 82.0 52 76.9
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.0e-08 65.9 102 42.2


User provided reference genes

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