Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 2.7e-109 398.7 198 100.0
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.6e-92 340.9 196 84.7
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 3.4e-88 328.6 195 80.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.4e-86 323.2 196 78.1
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.6e-85 319.7 196 78.6
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 2.1e-85 319.3 196 78.1
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.3e-83 312.0 198 75.8
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 4.3e-83 311.6 196 76.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 3.6e-82 308.5 198 73.7
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.4e-81 306.6 198 75.8
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.8e-81 306.2 197 74.6
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.4e-81 305.8 197 75.6
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 1.2e-80 303.5 199 73.9
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 2.0e-80 302.8 197 73.6
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 3.4e-80 302.0 198 74.2
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.3e-79 300.1 196 72.4
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.3e-79 300.1 196 71.4
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 3.8e-79 298.5 198 71.2
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.9e-79 298.1 198 72.7
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 8.4e-79 297.4 198 72.7
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.9e-78 296.2 198 72.7
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.9e-78 296.2 196 71.9
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 3.2e-78 295.4 198 71.7
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 5.4e-78 294.7 198 71.2
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.1e-77 292.7 200 71.0
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.7e-77 292.4 195 70.8
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.5e-77 292.0 198 71.7
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 4.6e-77 291.6 198 68.7
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.1e-76 288.1 196 70.4
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.1e-76 288.1 196 70.4
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.1e-75 287.0 198 70.7
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 3.3e-75 285.4 196 68.9
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 5.6e-75 284.6 196 69.9
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.6e-75 283.9 189 68.3
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.3e-74 283.5 196 69.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 2.8e-74 282.3 198 66.2
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 3.6e-74 282.0 198 67.7
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 8.1e-74 280.8 200 66.5
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.8e-73 279.6 199 66.8
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 3.1e-73 278.9 200 64.0
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 5.3e-73 278.1 200 66.0
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 9.0e-73 277.3 196 66.3
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.5e-72 276.6 194 68.6
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.6e-72 275.8 199 65.8
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.6e-72 275.8 199 65.8
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 3.4e-72 275.4 200 65.5
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 4.5e-72 275.0 199 69.3
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 9.9e-72 273.9 196 65.8
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.7e-71 273.1 193 66.3
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.2e-71 272.7 200 63.0
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 2.2e-71 272.7 200 65.5
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.2e-71 272.7 201 65.2
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.9e-71 272.3 200 67.0
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.9e-71 272.3 200 66.0
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.9e-71 272.3 198 65.7
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.9e-71 272.3 198 65.7
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.1e-70 270.4 198 68.2
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 1.4e-70 270.0 197 68.0
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.4e-70 269.2 195 65.1
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.2e-70 268.9 198 64.6
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 5.5e-70 268.1 196 63.8
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.2e-69 266.9 191 63.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 1.2e-69 266.9 223 61.9
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.6e-69 266.5 191 63.4
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.7e-69 265.8 191 63.4
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.0e-68 263.8 190 64.7
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 2.3e-68 262.7 169 74.0
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 5.1e-68 261.5 200 62.0
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.1e-68 261.5 193 65.3
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 6.7e-68 261.2 200 62.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 6.7e-68 261.2 192 64.6
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 8.7e-68 260.8 200 62.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 8.7e-68 260.8 202 61.9
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.1e-67 260.4 229 58.5
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.9e-67 259.6 230 57.4
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 2.5e-67 259.2 202 60.9
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 2.5e-67 259.2 202 60.9
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 4.3e-67 258.5 197 64.0
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 4.3e-67 258.5 248 55.2
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 5.6e-67 258.1 201 62.2
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 7.4e-67 257.7 197 60.4
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 9.6e-67 257.3 190 66.3
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 9.6e-67 257.3 200 61.0
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 1.3e-66 256.9 197 60.4
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 2.1e-66 256.1 200 59.5
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 4.8e-66 255.0 223 57.4
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 8.1e-66 254.2 225 58.2
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.4e-65 253.4 224 58.5
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 4.0e-65 251.9 197 59.4
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 4.0e-65 251.9 197 59.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.5e-64 250.0 190 61.6
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 2.0e-64 249.6 169 71.0
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.6e-64 249.2 196 63.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 3.4e-64 248.8 200 58.0
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.7e-63 246.5 193 60.6
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 6.5e-63 244.6 201 56.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 8.4e-63 244.2 193 59.1
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 9.3e-62 240.7 265 49.4
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.2e-61 240.4 193 58.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 2.7e-61 239.2 205 59.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 4.6e-61 238.4 229 53.7
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.8e-60 236.5 231 51.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 3.9e-60 235.3 231 52.8
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.1e-59 233.8 228 52.6
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.5e-59 233.4 228 51.8
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.7e-59 231.5 222 53.2
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-57 227.3 148 71.6
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 4.1e-57 225.3 194 53.6
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 2.0e-56 223.0 193 53.4
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 4.5e-56 221.9 198 51.5
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 3.8e-55 218.8 189 52.4
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 5.0e-55 218.4 149 71.8
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 5.0e-55 218.4 250 47.2
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.9e-54 216.5 194 52.1
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.5e-54 216.1 143 74.8
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 5.5e-54 214.9 198 55.6
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.2e-53 213.8 144 68.8
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 6.1e-53 211.5 146 71.2
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.8e-52 209.9 191 56.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.8e-52 209.9 136 72.1
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.3e-50 203.8 216 51.4
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.7e-50 202.2 197 49.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.7e-50 202.2 197 49.7
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.1e-49 199.1 198 52.5
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 3.8e-47 192.2 112 83.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.4e-46 190.3 191 55.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 2.5e-46 189.5 157 61.1
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.5e-46 188.3 196 53.6
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 7.2e-46 188.0 173 61.3
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 3.0e-44 182.6 195 44.1
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 2.0e-43 179.9 154 54.5
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.3e-43 178.7 189 49.2
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.7e-42 176.8 190 50.5
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.8e-42 176.0 119 66.4
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-42 176.0 200 46.5
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 4.1e-41 172.2 199 44.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.4e-38 163.7 149 53.7
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 7.9e-37 157.9 114 64.0
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.7e-36 154.8 113 69.0
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.0e-35 153.3 118 62.7
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 5.7e-35 151.8 152 53.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 4.1e-33 145.6 113 64.6
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 7.0e-33 144.8 110 63.6
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 5.9e-32 141.7 195 33.8
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 6.7e-28 128.3 111 54.1
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.8e-26 122.1 86 60.5
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 6.3e-26 121.7 200 41.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 7.7e-24 114.8 80 72.5
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.5e-22 110.5 187 38.5
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 3.0e-20 102.8 202 30.7
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.8e-19 97.8 57 84.2
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 3.7e-18 95.9 204 28.9
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.5e-16 89.4 55 80.0
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 7.2e-14 81.6 66 56.1
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.2e-10 70.1 49 67.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 5.0e-07 58.9 113 31.9
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 3.3e-06 56.2 49 55.1


User provided reference genes

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