Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 1.6e-156 556.2 315 100.0
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 1.5e-98 363.6 328 67.7
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.9e-93 346.7 297 70.0
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 7.5e-90 334.7 282 68.1
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.9e-89 332.8 309 67.0
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 1.2e-87 327.4 293 68.6
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 6.0e-87 325.1 341 62.2
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.3e-86 323.2 331 62.5
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.3e-86 323.2 331 62.5
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 3.0e-86 322.8 296 70.6
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 5.1e-86 322.0 311 65.6
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.2e-84 317.4 319 62.4
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 2.8e-84 316.2 283 69.6
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 4.7e-84 315.5 318 61.3
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 6.2e-84 315.1 329 61.4
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 1.8e-83 313.5 292 67.8
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.4e-83 313.2 346 59.8
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 6.8e-83 311.6 259 68.7
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 8.9e-83 311.2 274 66.8
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 2.0e-82 310.1 330 62.4
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 4.4e-82 308.9 264 71.6
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 9.9e-82 307.8 327 62.4
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 9.9e-82 307.8 253 75.5
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.2e-80 302.8 321 58.9
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.1e-79 300.1 340 59.4
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 3.5e-79 299.3 339 57.8
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 2.3e-78 296.6 314 59.6
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-77 293.5 350 56.3
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 2.8e-76 289.7 324 58.6
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.8e-76 289.7 318 58.8
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 3.6e-76 289.3 335 59.1
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 6.2e-76 288.5 332 56.3
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 8.1e-76 288.1 191 80.1
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.1e-75 286.2 333 55.3
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.1e-75 286.2 348 56.0
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 6.9e-75 285.0 174 86.2
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 9.0e-75 284.6 312 60.3
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.2e-74 284.3 177 82.5
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 1.5e-74 283.9 329 55.6
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.5e-74 283.9 332 58.7
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.6e-74 283.1 344 58.7
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 2.6e-74 283.1 257 67.3
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 9.9e-74 281.2 321 54.8
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 2.2e-73 280.0 279 58.8
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 3.8e-73 279.3 257 65.4
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 6.4e-73 278.5 315 54.3
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 8.4e-73 278.1 175 82.3
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 8.4e-73 278.1 248 70.6
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.4e-72 277.3 281 60.5
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.4e-72 276.6 328 56.4
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 3.2e-72 276.2 314 54.8
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 4.2e-72 275.8 257 63.8
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 5.4e-72 275.4 191 77.5
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 5.4e-72 275.4 191 77.5
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 5.4e-72 275.4 191 77.5
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.7e-70 270.4 312 54.5
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 3.0e-70 269.6 289 57.1
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 5.1e-70 268.9 302 57.6
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 5.1e-70 268.9 351 52.7
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 4.3e-69 265.8 177 77.4
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 4.3e-69 265.8 177 77.4
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 9.6e-69 264.6 262 60.3
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 6.2e-68 261.9 165 83.0
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 6.2e-68 261.9 165 83.0
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.1e-67 261.2 232 64.7
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 9.0e-67 258.1 174 76.4
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.2e-66 257.7 175 79.4
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.2e-66 257.7 172 79.7
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.2e-66 257.7 303 56.1
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.4e-66 256.1 173 79.2
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 4.5e-66 255.8 166 81.3
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 4.5e-66 255.8 199 69.8
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 4.5e-66 255.8 199 69.8
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 3.8e-65 252.7 369 48.8
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 4.9e-65 252.3 169 76.9
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.9e-64 250.4 173 75.7
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.4e-64 250.0 173 75.1
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 2.1e-63 246.9 177 76.3
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 4.6e-63 245.7 177 75.1
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 5.1e-62 242.3 177 73.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 8.7e-62 241.5 164 78.0
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 2.5e-61 240.0 210 65.2
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 3.3e-61 239.6 272 57.4
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 3.3e-61 239.6 329 52.3
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 5.6e-61 238.8 187 69.0
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.6e-60 237.3 187 69.0
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 2.4e-59 233.4 165 75.2
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 6.9e-59 231.9 168 75.0
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.5e-58 230.7 170 74.7
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 5.8e-58 228.8 207 64.3
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 7.6e-58 228.4 170 73.5
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 7.6e-58 228.4 290 52.8
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 2.9e-57 226.5 311 48.2
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.1e-56 224.6 192 65.6
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 1.3e-54 217.6 263 54.8
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 9.6e-53 211.5 253 52.2
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 2.4e-51 206.8 171 65.5
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.7e-49 200.7 177 65.0
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 9.3e-48 194.9 171 62.6
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 1.2e-47 194.5 127 78.7
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.6e-47 194.1 175 61.1
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 4.6e-47 192.6 165 63.0
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 6.0e-47 192.2 136 72.8
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 6.0e-47 192.2 136 72.8
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 2.3e-46 190.3 199 59.8
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 1.4e-43 181.0 110 83.6
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 5.7e-37 159.1 122 72.1
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 5.7e-37 159.1 127 69.3
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 6.3e-28 129.0 169 43.2
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 8.2e-28 128.6 173 43.4
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.1e-27 126.7 113 65.5
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 4.1e-27 126.3 74 89.2
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.4e-24 117.9 64 92.2
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 5.2e-22 109.4 109 59.6
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.1e-19 101.7 137 51.8
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 9.1e-19 98.6 196 45.4
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 1.5e-16 91.3 76 67.1
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 9.4e-16 88.6 197 40.1
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.0e-14 85.1 141 53.2
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 4.0e-14 83.2 129 51.2
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.6e-13 80.5 40 97.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 4.4e-13 79.7 131 43.5
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 7.5e-13 79.0 39 97.4
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.3e-12 78.2 110 49.1
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 5.9e-10 69.3 81 49.4
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 1.5e-08 64.7 79 54.4
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.4e-06 58.2 35 77.1


User provided reference genes

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