Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.0e-218 763.1 371 100.0
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 1.0e-93 347.8 412 46.8
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.8e-90 337.0 413 45.3
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.0e-89 333.6 408 45.8
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.8e-89 332.0 359 49.0
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.8e-89 332.0 408 45.6
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.2e-88 330.1 408 46.1
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.0e-87 325.1 410 44.6
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.0e-86 323.6 408 45.3
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.5e-86 322.8 408 44.9
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 4.6e-86 322.4 399 42.9
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.7e-85 320.5 408 44.1
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 9.5e-84 314.7 397 44.8
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.2e-83 314.3 403 44.4
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.7e-83 312.4 408 42.9
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 6.2e-83 312.0 408 43.6
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.1e-82 311.2 408 43.6
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.4e-82 310.8 410 43.9
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.4e-82 310.8 405 43.2
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.8e-82 310.5 408 43.4
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.3e-82 310.1 381 42.5
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 3.1e-82 309.7 391 42.7
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 5.2e-82 308.9 408 42.4
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 6.8e-82 308.5 404 43.6
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 8.9e-82 308.1 381 42.8
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 2.0e-81 307.0 397 43.3
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 4.4e-81 305.8 408 41.9
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.4e-81 305.8 406 43.8
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 4.4e-81 305.8 409 41.8
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 9.8e-81 304.7 349 47.6
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.4e-79 300.8 404 43.6
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.2e-78 297.7 406 40.6
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 2.1e-78 297.0 415 39.3
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 2.1e-78 297.0 372 45.4
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 2.7e-78 296.6 340 44.4
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 3.5e-78 296.2 384 43.5
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.5e-78 296.2 405 42.7
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 4.6e-78 295.8 383 40.7
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 4.6e-78 295.8 414 40.3
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 6.0e-78 295.4 405 41.7
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.3e-77 294.3 407 40.8
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.7e-77 293.9 396 42.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.3e-77 293.5 382 42.4
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 2.3e-77 293.5 383 42.3
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 3.0e-77 293.1 379 42.0
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 6.6e-77 292.0 379 41.7
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 6.6e-77 292.0 379 41.7
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 8.6e-77 291.6 410 40.7
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 8.6e-77 291.6 379 41.4
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.3e-76 289.7 383 42.0
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.6e-76 288.9 388 43.0
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.3e-76 288.5 407 41.8
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 9.5e-76 288.1 372 41.9
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 9.5e-76 288.1 407 40.5
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 3.6e-75 286.2 380 42.1
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.1e-75 285.0 408 40.7
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.1e-74 284.6 401 40.9
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.3e-74 283.5 380 41.6
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 3.1e-74 283.1 384 41.1
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.1e-74 283.1 373 42.9
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 3.1e-74 283.1 425 39.1
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 4.0e-74 282.7 429 40.1
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.2e-74 282.3 420 39.3
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.2e-74 282.3 411 39.7
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.2e-74 282.3 411 39.7
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 2.0e-73 280.4 359 43.2
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 2.6e-73 280.0 411 40.6
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 7.6e-73 278.5 402 39.8
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.3e-72 277.7 380 41.3
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.3e-72 277.7 380 41.3
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 4.9e-72 275.8 402 40.3
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 1.1e-71 274.6 384 41.4
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 2.4e-71 273.5 391 40.4
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.2e-71 273.1 360 43.1
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 3.2e-71 273.1 376 41.5
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 4.1e-71 272.7 357 42.9
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 9.2e-71 271.6 407 38.8
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.2e-70 271.2 142 94.4
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.7e-70 270.0 401 40.1
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 4.6e-70 269.2 382 40.3
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 6.0e-70 268.9 357 42.6
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.0e-69 266.5 418 38.3
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 3.9e-69 266.2 423 38.3
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 6.6e-69 265.4 400 39.8
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 8.6e-69 265.0 387 38.8
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 8.6e-69 265.0 415 38.1
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.5e-68 264.2 423 38.1
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.5e-68 264.2 403 40.2
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 1.5e-68 264.2 406 38.7
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.5e-68 263.5 372 39.5
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.5e-68 263.5 392 38.5
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.3e-68 263.1 380 38.7
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 3.3e-68 263.1 324 45.4
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 2.8e-67 260.0 349 41.8
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 4.7e-67 259.2 388 39.2
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.7e-67 259.2 394 38.3
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 4.7e-67 259.2 379 39.8
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.2e-67 258.8 368 40.2
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 6.2e-67 258.8 381 39.4
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 8.1e-67 258.5 381 39.4
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 8.1e-67 258.5 357 40.6
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.1e-66 258.1 371 39.1
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.4e-66 257.7 388 37.6
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.4e-66 257.7 381 39.4
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.8e-66 257.3 367 40.1
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 1.8e-66 257.3 388 38.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.1e-66 256.5 379 40.6
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-66 256.5 386 38.6
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 5.2e-66 255.8 395 38.7
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 8.9e-66 255.0 370 39.7
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 8.9e-66 255.0 389 38.0
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 8.9e-66 255.0 410 38.5
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-65 254.6 397 38.0
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.6e-65 253.4 396 38.4
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 2.6e-65 253.4 379 38.3
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.3e-64 251.1 396 37.6
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.7e-64 250.8 356 40.7
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.9e-64 250.0 384 37.8
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.8e-64 249.6 396 37.1
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 8.4e-64 248.4 384 38.0
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.9e-63 247.3 384 37.5
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 3.2e-63 246.5 393 37.9
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.2e-63 246.5 393 37.9
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.1e-63 245.4 317 44.2
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 9.3e-63 245.0 357 41.7
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.8e-62 241.9 362 39.2
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 7.8e-62 241.9 389 38.0
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.7e-61 238.4 403 36.7
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.0e-58 229.6 362 39.2
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 9.0e-58 228.4 383 36.6
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 9.9e-57 224.9 384 32.8
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.2e-55 219.5 393 33.1
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 5.4e-55 219.2 373 36.2
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 9.3e-55 218.4 333 38.4
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 2.1e-54 217.2 349 37.2
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.3e-53 214.5 234 47.9
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.6e-52 208.4 201 51.2
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.8e-50 204.1 318 36.8
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.0e-49 200.7 383 34.2
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.4e-49 199.9 368 33.7
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.7e-48 197.6 348 35.9
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 2.9e-48 196.8 128 71.1
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 2.9e-48 196.8 382 33.2
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 2.4e-47 193.7 386 32.6
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 2.4e-47 193.7 179 53.6
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.5e-46 189.9 350 32.0
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.9e-45 186.4 337 32.9
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.1e-43 180.6 363 32.5
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.8e-42 177.6 431 27.6
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 9.0e-42 175.3 138 59.4
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 7.6e-41 172.2 398 27.6
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.8e-37 161.0 358 28.2
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 8.7e-37 158.7 184 48.9
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 8.7e-37 158.7 138 54.3
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.9e-36 157.5 195 44.6
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 7.4e-36 155.6 132 56.1
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 7.4e-36 155.6 288 34.4
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 9.0e-34 148.7 361 28.3
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.8e-32 143.3 145 51.0
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 8.5e-32 142.1 125 54.4
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.7e-29 132.1 128 52.3
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 3.7e-27 126.7 152 46.7
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 7.7e-25 119.0 238 33.6
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.2e-22 111.7 262 31.3
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 4.6e-22 109.8 282 30.9
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 4.6e-22 109.8 112 51.8
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 6.1e-22 109.4 198 39.9
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.0e-12 77.8 64 57.8
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.1e-10 70.1 40 75.0
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.5e-09 67.0 56 58.9
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 9.4e-07 58.9 46 56.5
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 2.1e-06 57.8 39 66.7


User provided reference genes

Program Settings