Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014779001 Vitis vinifera HOM05D000422 ORTHO05D438873 2.0e-40 168.7 90 100.0
GSVIVG01007880001 Vitis vinifera HOM05D000422 ORTHO05D003570 2.0e-11 72.4 65 67.7
COL.COLO4_36898 Corchorus olitorius HOM05D000422 ORTHO05D003570 5.8e-11 70.9 65 66.2
COL.COLO4_38108 Corchorus olitorius HOM05D000422 ORTHO05D003570 5.8e-11 70.9 65 66.2
Lj5A104T40 Lonicera japonica HOM05D000422 ORTHO05D003570 7.6e-11 70.5 65 66.2
Os05g0519700 Oryza sativa ssp. japonica HOM05D000422 ORTHO05D003570 7.6e-11 70.5 65 64.6
Thecc.03G100100 Theobroma cacao HOM05D000422 ORTHO05D003570 7.6e-11 70.5 65 66.2
Zm00001eb293780 Zea mays HOM05D000422 ORTHO05D003570 7.6e-11 70.5 65 64.6
Oeu001008.1 Olea europaea HOM05D000422 ORTHO05D003570 9.9e-11 70.1 64 67.2
Oeu001009.1 Olea europaea HOM05D000422 ORTHO05D003570 9.9e-11 70.1 64 67.2
Oeu008250.1 Olea europaea HOM05D000422 ORTHO05D003570 1.3e-10 69.7 64 64.1
vmacro17599 Vaccinium macrocarpon HOM05D000422 ORTHO05D003570 1.3e-10 69.7 65 64.6
Cfa019315 Carpinus fangiana HOM05D000422 ORTHO05D003570 1.7e-10 69.3 65 64.6
CDE02G1700 Ceratophyllum demersum HOM05D000422 ORTHO05D003570 2.2e-10 68.9 64 65.6
PGR044G0818 Punica granatum HOM05D000422 ORTHO05D003570 2.2e-10 68.9 65 64.6
Sc12g0006610 Simmondsia chinensis HOM05D000422 ORTHO05D003570 2.2e-10 68.9 65 64.6
CDE08G0638 Ceratophyllum demersum HOM05D000422 ORTHO05D003570 2.9e-10 68.6 65 63.1
Dinv22790 Davidia involucrata HOM05D000422 ORTHO05D003570 2.9e-10 68.6 70 61.4
Eucgr.K02521 Eucalyptus grandis HOM05D000422 ORTHO05D003570 2.9e-10 68.6 65 63.1
HPP92_022976 Vanilla planifolia HOM05D000422 ORTHO05D003570 2.9e-10 68.6 65 64.6
Duzib084G0855 Durio zibethinus HOM05D000422 ORTHO05D003570 3.8e-10 68.2 65 64.6
Glyma.06G202200 Glycine max HOM05D000422 ORTHO05D003570 3.8e-10 68.2 65 64.6
Gohir.D07G073400 Gossypium hirsutum HOM05D000422 ORTHO05D003570 3.8e-10 68.2 65 64.6
Gorai.001G077600 Gossypium raimondii HOM05D000422 ORTHO05D003570 3.8e-10 68.2 65 64.6
Sed0000797 Sechium edule HOM05D000422 ORTHO05D003570 3.8e-10 68.2 65 64.6
Hund09899 Selenicereus undatus HOM05D000422 ORTHO05D003570 3.8e-10 68.2 64 65.6
Dinv17401 Davidia involucrata HOM05D000422 ORTHO05D003570 4.9e-10 67.8 65 63.1
SalBow7G2929 Salvia bowleyana HOM05D000422 ORTHO05D003570 4.9e-10 67.8 64 65.6
Atru.chr12.1285 Acer truncatum HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 63.1
Atru.chr12.1292 Acer truncatum HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 63.1
Ah.11g047920 Amaranthus hybridus HOM05D000422 ORTHO05D003570 6.4e-10 67.4 64 65.6
CANSAT56G0137 Cannabis sativa HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 63.1
ClCG04G011880 Citrullus lanatus HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 61.5
Cc04_g13250 Coffea canephora HOM05D000422 ORTHO05D003570 6.4e-10 67.4 64 62.5
MELO3C002020.2 Cucumis melo HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 61.5
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 61.5
Gohir.A03G069700 Gossypium hirsutum HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 64.6
Sabra15G0081900 Salix brachista HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 63.1
THA.LOC104812099 Tarenaya hassleriana HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 61.5
TWI60G1501 Tripterygium wilfordii HOM05D000422 ORTHO05D003570 6.4e-10 67.4 65 63.1
CiPaw.11G051900 Carya illinoinensis HOM05D000422 ORTHO05D003570 8.4e-10 67.0 65 63.1
Gohir.A07G069000 Gossypium hirsutum HOM05D000422 ORTHO05D003570 8.4e-10 67.0 65 63.1
MBI07_g34676_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D003570 8.4e-10 67.0 65 63.1
MD14G1210600 Malus domestica HOM05D000422 ORTHO05D003570 8.4e-10 67.0 65 63.1
RcHm_v2.0_Chr7g0182901 Rosa chinensis HOM05D000422 ORTHO05D003570 8.4e-10 67.0 65 64.6
TAR629G1723 Trochodendron aralioides HOM05D000422 ORTHO05D003570 8.4e-10 67.0 65 63.1
MSTRG.4455 Avicennia marina HOM05D000422 ORTHO05D003570 1.1e-09 66.6 64 62.5
EL10Ac5g11116 Beta vulgaris HOM05D000422 ORTHO05D003570 1.1e-09 66.6 64 64.1
CSS0011182 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 61.5
CSS0042047 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 61.5
Duzib205G1888 Durio zibethinus HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 63.1
FAN08G0773 Fragaria x ananassa HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 64.6
FAN13G3227 Fragaria x ananassa HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 64.6
Lalb_Chr13g0302911 Lupinus albus HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 61.5
QL10p019244 Quercus lobata HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 63.1
Rhsim08G0147100 Rhododendron simsii HOM05D000422 ORTHO05D003570 1.1e-09 66.6 65 61.5
unitig_37.g12723 Utricularia gibba HOM05D000422 ORTHO05D003570 1.1e-09 66.6 64 62.5
Haze_07704 Corylus avellana HOM05D000422 ORTHO05D003570 1.4e-09 66.2 65 61.5
Haze_27344 Corylus avellana HOM05D000422 ORTHO05D003570 1.4e-09 66.2 65 61.5
MD06G1201600 Malus domestica HOM05D000422 ORTHO05D003570 1.4e-09 66.2 65 63.1
Oeu008247.1 Olea europaea HOM05D000422 ORTHO05D003570 1.4e-09 66.2 64 62.5
SGA_v2.0_scaffold7G04036 Striga asiatica HOM05D000422 ORTHO05D003570 1.4e-09 66.2 64 62.5
DCAR_010146 Daucus carota HOM05D000422 ORTHO05D003570 1.9e-09 65.9 70 60.0
ECA232G3644 Erigeron canadensis HOM05D000422 ORTHO05D003570 1.9e-09 65.9 70 60.0
FvH4_5g14020 Fragaria vesca HOM05D000422 ORTHO05D003570 1.9e-09 65.9 65 64.6
FAN18G4292 Fragaria x ananassa HOM05D000422 ORTHO05D003570 1.9e-09 65.9 65 64.6
Gohir.D03G096200 Gossypium hirsutum HOM05D000422 ORTHO05D003570 1.9e-09 65.9 65 63.1
Gorai.003G100900 Gossypium raimondii HOM05D000422 ORTHO05D003570 1.9e-09 65.9 65 63.1
TWI81G0052 Tripterygium wilfordii HOM05D000422 ORTHO05D003570 1.9e-09 65.9 65 61.5
VMungo1309G2280 Vigna mungo HOM05D000422 ORTHO05D003570 1.9e-09 65.9 65 61.5
BcaC08g46861 Brassica carinata HOM05D000422 ORTHO05D003570 2.4e-09 65.5 65 60.0
A07p40110 Brassica napus HOM05D000422 ORTHO05D003570 2.4e-09 65.5 65 60.0
C06p48480 Brassica napus HOM05D000422 ORTHO05D003570 2.4e-09 65.5 65 60.0
BolC6t39876H Brassica oleracea HOM05D000422 ORTHO05D003570 2.4e-09 65.5 65 60.0
BraA07t31556Z Brassica rapa HOM05D000422 ORTHO05D003570 2.4e-09 65.5 65 60.0
Aqoxy6G00459 Aquilegia oxysepala HOM05D000422 ORTHO05D003570 3.2e-09 65.1 65 60.0
Migut.D01695 Erythranthe guttata HOM05D000422 ORTHO05D003570 3.2e-09 65.1 64 62.5
HanXRQChr09g0270211 Helianthus annuus HOM05D000422 ORTHO05D003570 3.2e-09 65.1 70 58.6
HanXRQChr16g0502371 Helianthus annuus HOM05D000422 ORTHO05D003570 3.2e-09 65.1 70 58.6
Manes.06G085600 Manihot esculenta HOM05D000422 ORTHO05D003570 3.2e-09 65.1 65 63.1
Potri.015G056900 Populus trichocarpa HOM05D000422 ORTHO05D003570 3.2e-09 65.1 65 61.5
Potri.015G057000 Populus trichocarpa HOM05D000422 ORTHO05D003570 3.2e-09 65.1 65 61.5
Actinidia25778 Actinidia chinensis HOM05D000422 ORTHO05D003570 4.2e-09 64.7 65 61.5
arahy.Tifrunner.gnm1.ann1.38YHDK Arachis hypogaea HOM05D000422 ORTHO05D003570 4.2e-09 64.7 65 61.5
BcaB02g06937 Brassica carinata HOM05D000422 ORTHO05D027513 4.2e-09 64.7 65 60.0
C06p33420 Brassica napus HOM05D000422 ORTHO05D003570 4.2e-09 64.7 65 60.0
BolC6t38457H Brassica oleracea HOM05D000422 ORTHO05D003570 4.2e-09 64.7 65 60.0
MD14G1211000 Malus domestica HOM05D000422 ORTHO05D003570 4.2e-09 64.7 65 61.5
Hund02594 Selenicereus undatus HOM05D000422 ORTHO05D003570 4.2e-09 64.7 64 62.5
BcaB02g06935 Brassica carinata HOM05D000422 ORTHO05D003570 5.4e-09 64.3 65 60.0
CAN.G479.16 Capsicum annuum HOM05D000422 ORTHO05D003570 5.4e-09 64.3 64 60.9
Cpa.g.sc94.30 Carica papaya HOM05D000422 ORTHO05D003570 5.4e-09 64.3 65 60.0
AUR62008514 Chenopodium quinoa HOM05D000422 ORTHO05D003570 5.4e-09 64.3 64 60.9
AUR62021576 Chenopodium quinoa HOM05D000422 ORTHO05D003570 5.4e-09 64.3 64 60.9
Glyma.05G022200 Glycine max HOM05D000422 ORTHO05D003570 5.4e-09 64.3 65 61.5
RcHm_v2.0_Chr7g0182871 Rosa chinensis HOM05D000422 ORTHO05D003570 5.4e-09 64.3 65 63.1
SEGI_00080 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 5.4e-09 64.3 65 60.0
SGA_v2.0_scaffold114G31923 Striga asiatica HOM05D000422 ORTHO05D003570 5.4e-09 64.3 69 58.0
PSO566G0203 Papaver somniferum HOM05D000422 ORTHO05D003570 7.1e-09 63.9 64 60.9
PSO782G0623 Papaver somniferum HOM05D000422 ORTHO05D003570 7.1e-09 63.9 64 60.9
Phvul.004G044100 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 7.1e-09 63.9 65 60.0
Pp3c19_4790 Physcomitrium patens HOM05D000422 ORTHO05D003570 7.1e-09 63.9 64 60.9
SEGI_29151 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 7.1e-09 63.9 65 60.0
TPR.G22138 Trifolium pratense HOM05D000422 ORTHO05D003570 7.1e-09 63.9 65 60.0
arahy.Tifrunner.gnm1.ann1.TFY1SD Arachis hypogaea HOM05D000422 ORTHO05D003570 9.3e-09 63.5 65 60.0
A07p29460 Brassica napus HOM05D000422 ORTHO05D003570 9.3e-09 63.5 65 60.0
BraA07t30585Z Brassica rapa HOM05D000422 ORTHO05D003570 9.3e-09 63.5 65 60.0
Ca_21783_v3 Cicer arietinum L. HOM05D000422 ORTHO05D003570 9.3e-09 63.5 65 60.0
Dinv22789 Davidia involucrata HOM05D000422 ORTHO05D003570 9.3e-09 63.5 70 57.1
Eucgr.B00581 Eucalyptus grandis HOM05D000422 ORTHO05D003570 9.3e-09 63.5 76 53.9
Hma1.2p1_0322F.1_g124740 Hydrangea macrophylla HOM05D000422 ORTHO05D003570 9.3e-09 63.5 69 60.9
Nitab4.5_0019776g0010 Nicotiana tabacum HOM05D000422 ORTHO05D003570 9.3e-09 63.5 64 60.9
Peaxi162Scf00201g00240 Petunia axillaris HOM05D000422 ORTHO05D003570 9.3e-09 63.5 64 60.9
Phvul.009G192401 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 9.3e-09 63.5 65 61.5
Prupe.5G203700 Prunus persica HOM05D000422 ORTHO05D003570 9.3e-09 63.5 65 60.0
RhsimUnG0229300 Rhododendron simsii HOM05D000422 ORTHO05D003570 9.3e-09 63.5 64 60.9
AL1G31100 Arabidopsis lyrata HOM05D000422 ORTHO05D003570 1.2e-08 63.2 65 56.9
Lsat_1_v5_gn_4_110600 Lactuca sativa HOM05D000422 ORTHO05D003570 1.2e-08 63.2 70 58.6
Lsat_1_v5_gn_4_116120 Lactuca sativa HOM05D000422 ORTHO05D003570 1.2e-08 63.2 70 58.6
Nitab4.5_0001688g0070 Nicotiana tabacum HOM05D000422 ORTHO05D003570 1.2e-08 63.2 64 60.9
Nitab4.5_0003906g0010 Nicotiana tabacum HOM05D000422 ORTHO05D003570 1.2e-08 63.2 64 60.9
Peaxi162Scf00013g00629 Petunia axillaris HOM05D000422 ORTHO05D003570 1.2e-08 63.2 64 59.4
Psat4g047480 Pisum sativum HOM05D000422 ORTHO05D003570 1.2e-08 63.2 65 60.0
PGSC0003DMG400024644 Solanum tuberosum HOM05D000422 ORTHO05D003570 1.2e-08 63.2 64 59.4
TPR.G2025 Trifolium pratense HOM05D000422 ORTHO05D003570 1.2e-08 63.2 65 60.0
Nitab4.5_0001485g0200 Nicotiana tabacum HOM05D000422 ORTHO05D003570 1.6e-08 62.8 64 60.9
Peaxi162Scf00201g00232 Petunia axillaris HOM05D000422 ORTHO05D003570 1.6e-08 62.8 64 59.4
Solyc06g082560.3 Solanum lycopersicum HOM05D000422 ORTHO05D003570 1.6e-08 62.8 64 59.4
Sopen06g033960 Solanum pennellii HOM05D000422 ORTHO05D003570 1.6e-08 62.8 64 59.4
Medtr4g109450 Medicago truncatula HOM05D000422 ORTHO05D003570 2.1e-08 62.4 65 60.0
CARHR067570 Cardamine hirsuta HOM05D000422 ORTHO05D003570 2.7e-08 62.0 65 58.5
Ciclev10018766m.g Citrus clementina HOM05D000422 ORTHO05D003570 2.7e-08 62.0 65 58.5
Lj4g0026924 Lotus japonicus HOM05D000422 ORTHO05D003570 2.7e-08 62.0 65 58.5
Psat4g050520 Pisum sativum HOM05D000422 ORTHO05D003570 2.7e-08 62.0 65 60.0
AL2G34170 Arabidopsis lyrata HOM05D000422 ORTHO05D003570 3.5e-08 61.6 65 56.9
AT1G74310 Arabidopsis thaliana HOM05D000422 ORTHO05D003570 3.5e-08 61.6 65 56.9
Gohir.A03G042198 Gossypium hirsutum HOM05D000422 ORTHO05D003570 3.5e-08 61.6 65 58.5
Sp5g29470 Schrenkiella parvula HOM05D000422 ORTHO05D003570 3.5e-08 61.6 65 58.5
Solyc03g115230.3 Solanum lycopersicum HOM05D000422 ORTHO05D003570 3.5e-08 61.6 64 59.4
Sopen03g034270 Solanum pennellii HOM05D000422 ORTHO05D003570 3.5e-08 61.6 64 59.4
HanXRQChr16g0502311 Helianthus annuus HOM05D000422 ORTHO05D003570 4.6e-08 61.2 65 56.9
Medtr7g028970 Medicago truncatula HOM05D000422 ORTHO05D003570 4.6e-08 61.2 65 58.5
SMO117G0193 Selaginella moellendorffii HOM05D000422 ORTHO05D003570 4.6e-08 61.2 64 59.4
TPR.G28568 Trifolium pratense HOM05D000422 ORTHO05D003570 4.6e-08 61.2 65 56.9
FAN10G0187 Fragaria x ananassa HOM05D000422 ORTHO05D003570 6.0e-08 60.8 65 58.5
Aa31LG4G4560 Aethionema arabicum HOM05D000422 ORTHO05D003570 7.8e-08 60.5 65 56.9
Thhalv10018095m.g Eutrema salsugineum HOM05D000422 ORTHO05D003570 7.8e-08 60.5 65 56.9
ATR1153G094 Amborella trichopoda HOM05D000422 ORTHO05D003570 1.0e-07 60.1 64 59.4
Mapoly0033s0015 Marchantia polymorpha HOM05D000422 ORTHO05D003570 1.0e-07 60.1 64 59.4
Peaxi162Scf00013g00518 Petunia axillaris HOM05D000422 ORTHO05D003570 1.0e-07 60.1 79 50.6
AL7G41360 Arabidopsis lyrata HOM05D000422 ORTHO05D003570 1.3e-07 59.7 64 57.8
AT4G14670 Arabidopsis thaliana HOM05D000422 ORTHO05D003570 1.3e-07 59.7 64 56.2
Carub.0002s2109 Capsella rubella HOM05D000422 ORTHO05D003570 1.3e-07 59.7 65 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4233 Anthoceros agrestis HOM05D000422 ORTHO05D003570 1.7e-07 59.3 64 57.8
SEGI_16960 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 1.7e-07 59.3 65 55.4
Carub.0007s2753 Capsella rubella HOM05D000422 ORTHO05D003570 3.0e-07 58.5 64 56.2
MD06G1201200 Malus domestica HOM05D000422 ORTHO05D003570 3.0e-07 58.5 65 55.4
RcHm_v2.0_Chr1g0366791 Rosa chinensis HOM05D000422 ORTHO05D003570 3.0e-07 58.5 65 60.0
FvH4_7g22310 Fragaria vesca HOM05D000422 ORTHO05D003570 3.9e-07 58.2 65 55.4
FAN06G3633 Fragaria x ananassa HOM05D000062 ORTHO05D208197 3.9e-07 58.2 65 55.4


User provided reference genes

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