Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 0.0e+00 1251.5 660 100.0
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 0.0e+00 1130.9 663 90.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 5.0e-277 957.6 702 74.5
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 1.0e-274 949.9 685 77.4
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 9.4e-268 926.8 710 75.6
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.4e-263 912.1 687 75.8
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.2e-258 894.4 670 74.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 5.5e-252 874.4 702 68.8
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 9.5e-252 873.6 688 70.9
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 4.4e-249 864.8 688 70.2
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.3e-248 863.2 699 69.0
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 2.0e-246 855.9 668 71.7
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 6.6e-245 850.9 697 67.4
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 8.6e-245 850.5 703 68.4
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.2e-243 846.7 688 71.4
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 2.8e-243 845.5 706 68.0
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 3.0e-242 842.0 700 68.7
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 3.0e-242 842.0 696 67.4
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 8.9e-242 840.5 698 65.8
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 7.5e-241 837.4 697 66.9
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 7.0e-239 830.9 702 69.4
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 4.7e-235 818.1 697 66.9
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.4e-233 812.0 695 68.8
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 9.8e-233 810.4 699 68.5
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 2.0e-230 802.7 714 64.1
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 6.0e-230 801.2 713 63.7
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 7.8e-230 800.8 699 68.4
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 1.7e-229 799.7 719 63.0
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 2.3e-229 799.3 679 68.2
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 5.6e-228 794.7 713 63.8
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 7.3e-228 794.3 715 63.9
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.2e-227 793.5 700 66.7
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 1.6e-227 793.1 695 67.8
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.1e-227 792.7 695 67.6
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.6e-227 792.0 679 67.0
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 4.7e-227 791.6 709 63.2
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 6.2e-227 791.2 697 67.4
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 6.2e-227 791.2 709 63.3
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 6.2e-227 791.2 694 67.9
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 6.2e-227 791.2 694 68.0
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 8.1e-227 790.8 679 68.0
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 1.8e-226 789.6 733 65.1
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 4.0e-226 788.5 692 67.8
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 8.9e-226 787.3 714 64.3
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 7.5e-225 784.3 707 63.5
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 2.9e-224 782.3 632 69.0
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 8.3e-224 780.8 693 64.6
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.4e-223 780.0 685 66.6
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 7.1e-223 777.7 718 62.4
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 2.1e-222 776.2 694 64.6
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 7.8e-222 774.2 693 66.7
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.0e-221 773.9 688 62.4
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.7e-221 773.1 695 66.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 7.3e-220 767.7 703 63.3
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 9.5e-220 767.3 702 63.1
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 1.2e-219 766.9 703 63.3
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 6.2e-219 764.6 681 64.8
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 8.4e-216 754.2 697 64.8
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.1e-215 753.8 712 62.4
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 2.4e-215 752.7 706 63.7
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.0e-213 747.3 694 63.1
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 5.1e-213 745.0 683 63.5
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 5.6e-212 741.5 684 65.5
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 2.4e-210 736.1 715 64.6
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.5e-209 733.4 744 59.7
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 7.6e-209 731.1 689 63.4
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 9.9e-209 730.7 712 60.1
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.3e-208 730.3 700 62.9
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 8.4e-208 727.6 599 68.6
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 5.4e-207 724.9 702 61.1
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.6e-206 723.4 704 60.7
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 3.9e-205 718.8 696 63.1
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.3e-200 703.7 699 61.2
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.6e-198 696.8 690 59.1
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 4.6e-198 695.3 693 61.2
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.9e-197 692.2 683 62.4
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 2.5e-196 689.5 674 62.0
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 2.5e-196 689.5 693 61.8
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 4.8e-195 685.3 696 59.3
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 6.9e-194 681.4 693 58.7
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.5e-193 680.2 692 60.1
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.3e-192 677.2 680 61.0
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 1.9e-191 673.3 689 57.8
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 7.9e-190 667.9 695 58.0
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.1e-188 664.1 554 64.8
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.3e-187 660.6 696 57.8
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 2.1e-187 659.8 694 60.4
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 8.2e-187 657.9 702 56.8
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.4e-186 656.4 749 57.0
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.2e-183 645.6 714 56.2
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.8e-178 630.2 727 55.7
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 1.9e-175 620.2 580 62.8
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 2.5e-175 619.8 685 55.6
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 3.2e-175 619.4 685 55.6
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 3.2e-175 619.4 534 65.0
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 4.2e-175 619.0 638 60.0
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 2.1e-174 616.7 578 63.3
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.3e-173 614.0 688 54.9
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 1.5e-172 610.5 686 55.7
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 2.4e-170 603.2 689 54.3
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 7.9e-166 588.2 546 62.3
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 7.7e-161 571.6 522 62.3
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.4e-159 567.4 557 58.9
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.8e-157 560.5 518 61.8
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 1.4e-154 550.8 437 73.0
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.2e-150 537.7 485 64.1
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 1.3e-147 527.7 553 56.6
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.4e-146 524.2 644 51.1
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 1.8e-146 523.9 568 55.5
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 7.7e-137 491.9 704 45.7
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 3.6e-134 483.0 328 78.0
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 1.2e-129 468.0 355 72.1
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.1e-122 444.9 320 73.8
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 1.4e-122 444.5 333 73.3
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 4.3e-111 406.4 400 59.2
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 3.6e-110 403.3 351 66.7
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 1.7e-107 394.4 554 44.6
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.2e-99 367.5 350 60.9
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 2.6e-92 344.0 368 55.7
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.2e-89 335.1 781 34.2
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 4.6e-89 333.2 818 33.0
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 1.7e-83 314.7 376 52.1
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.5e-68 265.0 329 55.3
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-66 258.5 320 56.9
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.7e-63 246.5 302 52.0
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.4e-61 241.9 415 41.0
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 3.4e-60 237.3 287 51.6
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.8e-56 224.9 143 82.5
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.3e-47 194.1 219 53.9
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 7.4e-47 193.0 214 56.1
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 4.8e-46 190.3 189 51.3
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.1e-45 187.6 125 78.4
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.0e-40 172.6 276 42.8
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 5.9e-36 156.8 131 67.2
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 2.9e-27 127.9 155 50.3
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 5.5e-26 123.6 145 68.3
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 2.2e-22 111.7 135 44.4
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.8e-22 111.3 104 62.5
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 6.1e-17 93.6 82 62.2
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 2.2e-06 58.5 92 35.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 4.9e-06 57.4 116 35.3
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 6.4e-06 57.0 56 44.6


User provided reference genes

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