Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 9.5e-171 604.4 585 100.0
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 7.3e-131 471.9 583 81.0
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 4.8e-130 469.2 585 82.7
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.5e-128 464.2 583 85.1
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.7e-125 453.4 585 83.9
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.4e-121 440.3 585 80.2
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 1.2e-120 438.0 583 74.8
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.6e-120 436.8 585 77.3
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 5.8e-120 435.6 582 75.1
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 5.8e-120 435.6 583 79.4
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.1e-118 431.4 585 79.5
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.1e-118 431.4 585 79.1
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 3.5e-117 426.4 583 79.9
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 1.3e-116 424.5 582 79.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 6.7e-116 422.2 581 77.6
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 6.9e-113 412.1 583 79.9
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 4.5e-112 409.5 587 73.3
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 4.2e-110 402.9 581 77.3
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.2e-109 401.4 497 84.1
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.6e-109 401.0 583 74.3
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 2.1e-109 400.6 585 75.4
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 2.2e-106 390.6 585 75.7
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 4.8e-106 389.4 585 74.7
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 8.2e-106 388.7 585 71.6
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 4.1e-105 386.3 585 73.7
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 6.9e-105 385.6 582 76.5
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.6e-104 383.6 588 71.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 7.7e-104 382.1 591 70.6
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.7e-103 380.9 583 71.5
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.6e-101 374.4 585 75.7
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.1e-101 374.0 594 66.8
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.0e-100 370.2 591 71.7
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 3.9e-100 369.8 585 73.5
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 6.7e-100 369.0 584 71.7
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 6.7e-100 369.0 587 71.6
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 6.7e-100 369.0 585 72.6
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.5e-99 367.1 583 73.4
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 2.5e-99 367.1 584 69.7
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 1.3e-98 364.8 564 78.4
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 2.2e-98 364.0 590 71.4
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.2e-98 364.0 585 71.6
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 3.7e-98 363.2 585 75.6
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 1.8e-97 360.9 581 75.7
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 2.4e-97 360.5 586 63.8
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 2.0e-96 357.5 598 69.4
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 4.5e-96 356.3 585 75.7
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 2.2e-95 354.0 497 79.7
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 8.5e-95 352.1 583 76.0
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.1e-94 351.7 585 73.3
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 4.2e-94 349.7 590 70.0
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 4.2e-94 349.7 590 69.7
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 7.2e-94 349.0 585 70.6
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 9.4e-94 348.6 584 74.0
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 9.4e-94 348.6 552 70.3
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 2.1e-93 347.4 630 71.9
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 4.7e-93 346.3 497 69.4
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.0e-92 345.1 585 72.5
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.8e-92 344.4 574 62.0
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 1.8e-92 344.4 685 66.9
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 5.1e-92 342.8 584 74.8
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.7e-92 342.4 584 75.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 8.8e-92 342.0 583 54.7
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.5e-91 341.3 585 74.5
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 4.8e-90 336.3 583 70.5
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 2.4e-89 334.0 598 66.6
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.3e-89 332.8 365 70.4
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 5.3e-89 332.8 602 71.8
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 2.0e-88 330.9 563 70.2
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.0e-88 330.9 583 73.8
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 2.0e-88 330.9 586 72.7
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 3.5e-88 330.1 521 72.7
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 4.5e-88 329.7 585 68.0
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 5.9e-88 329.3 598 66.2
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.7e-87 327.8 496 77.0
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 2.2e-87 327.4 585 67.2
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.1e-86 325.1 583 71.2
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 4.2e-86 323.2 562 70.5
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 5.5e-86 322.8 587 69.8
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 9.4e-86 322.0 320 83.1
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.0e-84 318.5 649 62.2
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.3e-82 311.6 409 74.1
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 3.7e-82 310.1 584 66.3
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 1.4e-81 308.1 586 71.2
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 5.3e-81 306.2 564 71.1
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 3.5e-80 303.5 584 73.5
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.3e-79 301.6 409 72.1
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 6.5e-79 299.3 562 70.8
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.4e-76 291.6 446 78.9
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 6.8e-76 289.3 315 65.1
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 3.4e-75 287.0 564 70.6
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.8e-74 283.9 583 70.7
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 4.1e-73 280.0 222 77.5
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.9e-70 271.2 589 67.7
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 4.7e-69 266.5 559 41.3
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 2.6e-67 260.8 518 71.0
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 6.3e-66 256.1 591 59.1
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 5.0e-63 246.5 571 61.5
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 6.6e-63 246.1 558 56.6
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 7.2e-62 242.7 562 61.7
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 6.6e-55 219.5 198 77.8
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 2.5e-54 217.6 594 56.1
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 2.2e-50 204.5 543 62.4
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 9.2e-49 199.1 585 60.5
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.2e-48 198.7 150 65.3
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 8.3e-42 176.0 237 53.6
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.3e-39 167.9 121 75.2
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 4.7e-29 133.7 143 75.5
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 4.7e-29 133.7 143 75.5
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 4.7e-29 133.7 143 75.5
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.3e-26 125.6 113 57.5
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.4e-25 120.2 75 78.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.2e-24 119.0 77 74.0
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.6e-24 118.6 75 76.0
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.6e-24 118.6 75 76.0
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 7.8e-24 116.3 231 32.9
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 1.0e-23 115.9 75 74.7
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.3e-22 110.5 100 61.0
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 3.2e-17 94.4 60 71.7
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 5.4e-17 93.6 103 50.5
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 1.3e-15 89.0 226 47.8
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 3.9e-15 87.4 102 74.5
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 6.6e-15 86.7 55 70.9
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.5e-14 84.7 46 91.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.1e-12 79.3 76 48.7
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.7e-10 72.0 40 82.5
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 8.4e-10 69.7 295 29.2
Thecc.07G078700 Theobroma cacao HOM05D006220 ORTHO05D007590 3.3e-06 57.8 62 53.2
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 9.6e-06 56.2 39 69.2


User provided reference genes

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