Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014065001 Vitis vinifera HOM05D000439 ORTHO05D006154 1.1e-165 586.6 318 100.0
Dinv23249 Davidia involucrata HOM05D000439 ORTHO05D006154 1.2e-66 257.7 321 47.0
Manes.06G128900 Manihot esculenta HOM05D000439 ORTHO05D006154 1.5e-61 240.7 325 45.8
Dinv13691 Davidia involucrata HOM05D000439 ORTHO05D006154 5.3e-59 232.3 340 45.9
Ciclev10032109m.g Citrus clementina HOM05D000439 ORTHO05D006154 2.6e-58 229.9 330 43.9
QL10p000140 Quercus lobata HOM05D000439 ORTHO05D006154 5.5e-56 222.2 323 44.0
CSS0035359 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006154 1.8e-51 207.2 315 41.3
Actinidia36853 Actinidia chinensis HOM05D000439 ORTHO05D006154 1.2e-50 204.5 327 38.2
Manes.14G042300 Manihot esculenta HOM05D000439 ORTHO05D006154 5.9e-50 202.2 321 41.7
TAR374G1365 Trochodendron aralioides HOM05D000439 ORTHO05D006154 5.9e-50 202.2 332 46.7
Actinidia08922 Actinidia chinensis HOM05D000439 ORTHO05D006154 1.7e-49 200.7 319 39.5
TWI23G1133 Tripterygium wilfordii HOM05D000439 ORTHO05D006154 5.5e-48 195.7 326 40.8
TWI14G1070 Tripterygium wilfordii HOM05D000439 ORTHO05D006154 6.1e-47 192.2 329 40.7
Lalb_Chr11g0068951 Lupinus albus HOM05D000439 ORTHO05D006154 1.4e-46 191.0 335 37.3
VMungo1309G2046 Vigna mungo HOM05D000439 ORTHO05D006154 3.0e-46 189.9 326 38.3
Potri.015G110132 Populus trichocarpa HOM05D000439 ORTHO05D006154 1.5e-45 187.6 327 40.1
Sabra15G0132200 Salix brachista HOM05D000439 ORTHO05D006154 5.7e-45 185.7 325 40.6
Cc04_g05540 Coffea canephora HOM05D000439 ORTHO05D006154 1.3e-44 184.5 317 42.0
Thecc.03G143900 Theobroma cacao HOM05D000439 ORTHO05D006154 1.3e-44 184.5 322 40.4
COL.COLO4_37292 Corchorus olitorius HOM05D000439 ORTHO05D006154 3.7e-44 183.0 342 40.9
Glyma.04G203400 Glycine max HOM05D000439 ORTHO05D006154 1.4e-43 181.0 329 38.6
Phvul.009G159400 Phaseolus vulgaris HOM05D000439 ORTHO05D006154 1.8e-43 180.6 324 36.7
Duzib205G0088 Durio zibethinus HOM05D000439 ORTHO05D006154 2.0e-42 177.2 325 39.4
Nn3g16172 Nelumbo nucifera HOM05D000439 ORTHO05D006154 2.7e-42 176.8 332 37.0
Eucgr.H00244 Eucalyptus grandis HOM05D000439 ORTHO05D006154 1.0e-41 174.9 327 38.2
arahy.Tifrunner.gnm1.ann1.94UTWG Arachis hypogaea HOM05D000439 ORTHO05D006154 2.5e-40 170.2 325 36.9
arahy.Tifrunner.gnm1.ann1.R8UNTY Arachis hypogaea HOM05D000439 ORTHO05D006154 3.2e-40 169.9 325 36.9
Lj1g0000423 Lotus japonicus HOM05D000439 ORTHO05D006154 4.2e-40 169.5 331 36.9
Glyma.06G162100 Glycine max HOM05D000439 ORTHO05D006154 5.5e-40 169.1 323 37.2
Ca_17046_v3 Cicer arietinum L. HOM05D000422 ORTHO05D001248 7.2e-40 168.7 328 36.6
TPR.G7812 Trifolium pratense HOM05D000439 ORTHO05D006154 2.7e-39 166.8 318 35.8
Psat5g056000 Pisum sativum HOM05D000439 ORTHO05D006154 8.8e-38 161.8 324 34.9
Migut.I00648 Erythranthe guttata HOM05D000439 ORTHO05D006154 1.2e-37 161.4 317 35.6
TAR622G0766 Trochodendron aralioides HOM05D000439 ORTHO05D006154 1.2e-37 161.4 298 38.9
Medtr3g098290 Medicago truncatula HOM05D000439 ORTHO05D006154 4.4e-37 159.5 330 35.8
Gohir.A03G055200 Gossypium hirsutum HOM05D000439 ORTHO05D006154 1.7e-36 157.5 326 37.7
Gorai.003G118000 Gossypium raimondii HOM05D000439 ORTHO05D006154 6.3e-36 155.6 326 37.4
Duzib084G0576 Durio zibethinus HOM05D000439 ORTHO05D006154 7.0e-35 152.1 329 37.4
Gohir.D03G111600 Gossypium hirsutum HOM05D000439 ORTHO05D006154 3.5e-34 149.8 326 36.8
Aqoxy5G03342 Aquilegia oxysepala HOM05D000439 ORTHO05D006154 1.0e-30 138.3 331 33.8
Rhsim12G0182700 Rhododendron simsii HOM05D000439 ORTHO05D006154 1.8e-30 137.5 319 32.9
Nitab4.5_0000976g0310 Nicotiana tabacum HOM05D000439 ORTHO05D006154 1.2e-29 134.8 302 33.4
Atru.chr6.1963 Acer truncatum HOM05D000439 ORTHO05D006154 1.5e-29 134.4 182 44.5
CAN.G1008.33 Capsicum annuum HOM05D000439 ORTHO05D006154 1.3e-28 131.3 319 32.6
Nitab4.5_0007669g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006154 1.3e-28 131.3 301 32.9
MELO3C003262.2 Cucumis melo HOM05D000439 ORTHO05D006154 3.7e-28 129.8 324 33.0
ClCG04G003180 Citrullus lanatus HOM05D000439 ORTHO05D006154 8.3e-28 128.6 329 34.7
Peaxi162Scf00314g00840 Petunia axillaris HOM05D000439 ORTHO05D006154 1.2e-26 124.8 285 34.4
Lalb_Chr23g0272801 Lupinus albus HOM05D000439 ORTHO05D006154 3.5e-26 123.2 214 39.3
Nitab4.5_0002540g0130 Nicotiana tabacum HOM05D000439 ORTHO05D006154 3.5e-26 123.2 319 31.3
CsaV3_4G029810 Cucumis sativus L. HOM05D000439 ORTHO05D006154 1.3e-25 121.3 328 31.7
CAN.G919.28 Capsicum annuum HOM05D000439 ORTHO05D006154 6.6e-25 119.0 297 32.3
Solyc03g117920.1 Solanum lycopersicum HOM05D000439 ORTHO05D006154 2.5e-24 117.1 339 31.9
CAN.G1008.29 Capsicum annuum HOM05D000439 ORTHO05D006154 7.3e-24 115.5 341 29.0
VMungo1309G0148 Vigna mungo HOM05D000439 ORTHO05D006154 1.6e-23 114.4 131 48.1
Nitab4.5_0000433g0080 Nicotiana tabacum HOM05D000439 ORTHO05D006154 3.6e-23 113.2 300 32.3
Sed0010080 Sechium edule HOM05D000439 ORTHO05D006154 4.7e-23 112.8 191 39.8
DCAR_025619 Daucus carota HOM05D000439 ORTHO05D006154 8.0e-23 112.1 343 28.9
AL8G25340 Arabidopsis lyrata HOM05D000439 ORTHO05D006154 1.2e-21 108.2 183 36.1
Sopen03g036820 Solanum pennellii HOM05D000439 ORTHO05D006154 1.2e-21 108.2 315 29.5
Nitab4.5_0000433g0090 Nicotiana tabacum HOM05D000439 ORTHO05D006154 1.5e-21 107.8 284 37.3
BcaB08g35465 Brassica carinata HOM05D000439 ORTHO05D006154 3.4e-21 106.7 184 34.2
Sp6g13280 Schrenkiella parvula HOM05D000439 ORTHO05D006154 7.5e-21 105.5 187 33.2
PGSC0003DMG400031151 Solanum tuberosum HOM05D000439 ORTHO05D006154 1.3e-20 104.8 307 30.3
CAN.G47.4 Capsicum annuum HOM05D000439 ORTHO05D006154 2.2e-20 104.0 317 27.8
Nitab4.5_0004781g0040 Nicotiana tabacum HOM05D000439 ORTHO05D006154 2.2e-20 104.0 322 29.5
A10p08000 Brassica napus HOM05D000439 ORTHO05D006154 2.9e-20 103.6 184 32.6
Gohir.D07G049801 Gossypium hirsutum HOM05D000439 ORTHO05D006154 2.9e-20 103.6 186 37.6
Nitab4.5_0012621g0010 Nicotiana tabacum HOM05D000439 ORTHO05D006154 2.9e-20 103.6 309 31.4
Sopen03g036830 Solanum pennellii HOM05D000439 ORTHO05D006154 2.9e-20 103.6 186 37.1
Aa31LG3G7580 Aethionema arabicum HOM05D000439 ORTHO05D006154 3.7e-20 103.2 206 34.0
Nitab4.5_0001000g0070 Nicotiana tabacum HOM05D000439 ORTHO05D006154 4.9e-20 102.8 215 35.3
BraSC35t45999Z Brassica rapa HOM05D000439 ORTHO05D006154 8.3e-20 102.1 184 32.6
BcaC01g06107 Brassica carinata HOM05D000439 ORTHO05D006154 1.1e-19 101.7 185 35.7
Gorai.001G052900 Gossypium raimondii HOM05D000439 ORTHO05D006154 4.1e-19 99.8 186 37.1
Nitab4.5_0001000g0080 Nicotiana tabacum HOM05D000439 ORTHO05D006154 4.1e-19 99.8 290 32.1
BcaC04g20734 Brassica carinata HOM05D000439 ORTHO05D006154 5.4e-19 99.4 168 34.5
C03p19250 Brassica napus HOM05D000439 ORTHO05D006154 5.4e-19 99.4 101 48.5
C09p39760 Brassica napus HOM05D000439 ORTHO05D006154 5.4e-19 99.4 168 34.5
BolC3t14311H Brassica oleracea HOM05D000439 ORTHO05D006154 5.4e-19 99.4 101 48.5
BolC9t56878H Brassica oleracea HOM05D000439 ORTHO05D006154 5.4e-19 99.4 168 34.5
PGSC0003DMG400014443 Solanum tuberosum HOM05D000439 ORTHO05D006154 5.4e-19 99.4 314 27.4
CAN.G564.8 Capsicum annuum HOM05D000439 ORTHO05D006154 9.2e-19 98.6 214 33.6
BcaC01g06069 Brassica carinata HOM05D000439 ORTHO05D006154 1.2e-18 98.2 101 48.5
Peaxi162Scf00091g00516 Petunia axillaris HOM05D000439 ORTHO05D006154 1.2e-18 98.2 202 35.6
Rhsim08G0200600 Rhododendron simsii HOM05D000439 ORTHO05D006154 1.2e-18 98.2 317 29.0
A03p16370 Brassica napus HOM05D000439 ORTHO05D006154 2.0e-18 97.4 101 46.5
BraA03t10927Z Brassica rapa HOM05D000439 ORTHO05D006154 2.0e-18 97.4 101 46.5
Solyc03g117930.4 Solanum lycopersicum HOM05D000439 ORTHO05D006154 4.6e-18 96.3 173 37.6
SGA_v2.0_scaffold5G02819 Striga asiatica HOM05D000439 ORTHO05D006154 6.0e-18 95.9 195 34.9
Peaxi162Scf00091g00051 Petunia axillaris HOM05D000439 ORTHO05D006154 1.3e-17 94.7 205 34.6
CARHR257000 Cardamine hirsuta HOM05D000439 ORTHO05D006154 5.0e-17 92.8 144 35.4
Thhalv10012996m.g Eutrema salsugineum HOM05D000439 ORTHO05D006154 5.0e-17 92.8 185 34.6
Sopen12g021430 Solanum pennellii HOM05D000439 ORTHO05D006154 6.6e-17 92.4 319 27.0
Carub.0008s1113 Capsella rubella HOM05D000439 ORTHO05D006154 1.1e-16 91.7 188 31.4
Sopen04g028360 Solanum pennellii HOM05D000439 ORTHO05D006154 1.1e-16 91.7 306 29.1
Solyc04g072200.3 Solanum lycopersicum HOM05D000439 ORTHO05D006154 3.3e-16 90.1 306 29.1
Solyc12g042440.2 Solanum lycopersicum HOM05D000439 ORTHO05D006154 3.3e-16 90.1 323 26.9
CAN.G1008.30 Capsicum annuum HOM05D000439 ORTHO05D006154 5.6e-16 89.4 111 43.2
Nitab4.5_0000976g0300 Nicotiana tabacum HOM05D000439 ORTHO05D006154 9.5e-16 88.6 150 39.3
PGSC0003DMG400044295 Solanum tuberosum HOM05D000439 ORTHO05D006154 9.5e-16 88.6 207 32.9
PGSC0003DMG400031150 Solanum tuberosum HOM05D000439 ORTHO05D006154 1.6e-15 87.8 214 35.0
Gohir.A07G045400 Gossypium hirsutum HOM05D000439 ORTHO05D006154 1.1e-14 85.1 186 33.3
ECA246G1416 Erigeron canadensis HOM05D000439 ORTHO05D006154 1.8e-14 84.3 182 33.0
Sopen06g030920 Solanum pennellii HOM05D000439 ORTHO05D006154 5.2e-14 82.8 205 30.7
CAN.G919.14 Capsicum annuum HOM05D000439 ORTHO05D006154 6.8e-14 82.4 134 35.8
Nitab4.5_0001216g0050 Nicotiana tabacum HOM05D000439 ORTHO05D006154 1.5e-13 81.3 200 34.0
Peaxi162Scf00091g00413 Petunia axillaris HOM05D000439 ORTHO05D006154 5.8e-13 79.3 299 28.4
MBI07_g11053_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006154 7.5e-13 79.0 216 27.8
unitig_61.g26220 Utricularia gibba HOM05D000439 ORTHO05D006154 9.8e-13 78.6 197 34.0
ECA246G4312 Erigeron canadensis HOM05D007610 ORTHO05D009592 1.3e-12 78.2 198 34.3
THA.LOC104808041 Tarenaya hassleriana HOM05D000439 ORTHO05D006154 2.2e-12 77.4 183 30.1
ECA246G3042 Erigeron canadensis HOM05D000439 ORTHO05D006154 3.7e-12 76.6 207 32.9
Solyc06g074450.3 Solanum lycopersicum HOM05D000439 ORTHO05D006154 8.3e-12 75.5 206 29.1
Peaxi162Scf00091g00412 Petunia axillaris HOM05D000439 ORTHO05D006154 2.4e-11 73.9 216 30.1
HanXRQChr05g0154491 Helianthus annuus HOM05D000439 ORTHO05D006154 2.1e-10 70.9 138 37.0
HanXRQChr05g0157581 Helianthus annuus HOM05D000439 ORTHO05D006154 2.1e-10 70.9 155 34.8
MBI11_g04259_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006154 6.0e-10 69.3 326 26.7
Lsat_1_v5_gn_5_9321 Lactuca sativa HOM05D000439 ORTHO05D006154 1.5e-08 64.7 157 33.1
PGSC0003DMG402014164 Solanum tuberosum HOM05D000439 ORTHO05D006154 2.5e-08 63.9 255 29.8
CDE02G0348 Ceratophyllum demersum HOM05D000439 ORTHO05D006154 1.6e-07 61.2 113 38.9
vmacro14686 Vaccinium macrocarpon HOM05D000439 ORTHO05D001363 1.8e-06 57.8 189 28.0
ATR0582G020 Amborella trichopoda HOM05D000439 ORTHO05D006154 6.8e-06 55.8 111 32.4
Lalb_Chr07g0194651 Lupinus albus HOM05D000439 ORTHO05D001363 6.8e-06 55.8 99 32.3
Sopen06g034320 Solanum pennellii HOM05D000439 ORTHO05D001363 6.8e-06 55.8 100 35.0
Nitab4.5_0011859g0010 Nicotiana tabacum HOM05D000439 ORTHO05D001363 8.9e-06 55.5 156 26.3


User provided reference genes

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