Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01014064001 Vitis vinifera HOM05D003220 ORTHO05D003944 2.5e-71 271.9 130 100.0
Glyma.08G043450 Glycine max HOM05D003220 ORTHO05D003944 1.6e-38 162.9 101 73.3
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 6.2e-38 161.0 90 78.9
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 6.2e-38 161.0 90 80.0
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 8.0e-38 160.6 90 80.0
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 8.0e-38 160.6 90 80.0
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 8.0e-38 160.6 90 80.0
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 1.1e-37 160.2 90 78.9
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 1.1e-37 160.2 90 78.9
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.1e-37 160.2 90 78.9
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.1e-37 160.2 90 78.9
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 1.1e-37 160.2 90 77.8
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 1.1e-37 160.2 90 77.8
Glyma.05G046900 Glycine max HOM05D003220 ORTHO05D003944 1.4e-37 159.8 90 77.8
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 1.4e-37 159.8 90 77.8
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 1.4e-37 159.8 90 77.8
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 1.4e-37 159.8 90 77.8
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 1.4e-37 159.8 86 81.4
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 1.4e-37 159.8 90 77.8
Sed0000451 Sechium edule HOM05D003220 ORTHO05D003944 1.8e-37 159.5 90 78.9
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 1.8e-37 159.5 90 77.8
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 2.3e-37 159.1 90 77.8
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 2.3e-37 159.1 90 77.8
Sed0017817 Sechium edule HOM05D003220 ORTHO05D003944 2.3e-37 159.1 90 77.8
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 3.1e-37 158.7 90 77.8
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 3.1e-37 158.7 90 77.8
TPR.G26144 Trifolium pratense HOM05D003220 ORTHO05D003944 3.1e-37 158.7 90 77.8
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 3.1e-37 158.7 90 77.8
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 4.0e-37 158.3 90 77.8
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 4.0e-37 158.3 90 77.8
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 4.0e-37 158.3 90 77.8
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 4.0e-37 158.3 90 77.8
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 4.0e-37 158.3 90 77.8
Lj1g0022826 Lotus japonicus HOM05D003220 ORTHO05D003944 4.0e-37 158.3 90 77.8
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 4.0e-37 158.3 90 77.8
MELO3C026229.2 Cucumis melo HOM05D003220 ORTHO05D003944 5.2e-37 157.9 90 76.7
CsaV3_1G000670 Cucumis sativus L. HOM05D003220 ORTHO05D003944 5.2e-37 157.9 90 76.7
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 5.2e-37 157.9 90 77.8
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 5.2e-37 157.9 90 77.8
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 5.2e-37 157.9 90 77.8
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 5.2e-37 157.9 90 77.8
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 5.2e-37 157.9 90 77.8
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 76.7
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 76.7
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 76.7
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 76.7
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 76.7
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 76.7
Nn4g26515 Nelumbo nucifera HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 77.8
Psat4g065240 Pisum sativum HOM05D003220 ORTHO05D003944 6.8e-37 157.5 87 81.6
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 77.8
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 6.8e-37 157.5 90 76.7
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 8.9e-37 157.1 90 75.6
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 8.9e-37 157.1 90 76.7
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 1.2e-36 156.8 90 76.7
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 1.2e-36 156.8 90 76.7
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.2e-36 156.8 90 76.7
vmacro05131 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 1.2e-36 156.8 90 76.7
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 1.5e-36 156.4 90 76.7
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 1.5e-36 156.4 90 76.7
ClCG06G017780 Citrullus lanatus HOM05D003220 ORTHO05D003944 1.5e-36 156.4 90 75.6
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 1.5e-36 156.4 90 76.7
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.5e-36 156.4 90 76.7
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 1.5e-36 156.4 90 74.4
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 1.5e-36 156.4 90 74.4
MSTRG.21708 Avicennia marina HOM05D003220 ORTHO05D003944 2.0e-36 156.0 90 76.7
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 2.0e-36 156.0 90 76.7
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 2.0e-36 156.0 90 76.7
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 2.0e-36 156.0 90 75.6
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 2.0e-36 156.0 90 75.6
SMO356G0518 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 2.0e-36 156.0 90 77.8
CSS0036065 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 2.6e-36 155.6 90 75.6
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 2.6e-36 155.6 90 75.6
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 2.6e-36 155.6 86 79.1
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 2.6e-36 155.6 90 74.4
vmacro18315 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 2.6e-36 155.6 90 75.6
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 3.4e-36 155.2 90 76.7
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 3.4e-36 155.2 90 75.6
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 3.4e-36 155.2 86 77.9
Rhsim02G0083400 Rhododendron simsii HOM05D003220 ORTHO05D003944 3.4e-36 155.2 88 76.1
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 3.4e-36 155.2 90 76.7
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 4.4e-36 154.8 90 76.7
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 4.4e-36 154.8 90 75.6
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 4.4e-36 154.8 90 75.6
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 4.4e-36 154.8 90 75.6
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 4.4e-36 154.8 90 75.6
CSS0002367 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 74.4
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 74.4
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 74.4
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 75.6
SMO356G0112 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 76.7
Solyc05g012270.3 Solanum lycopersicum HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 74.4
Sopen05g007100 Solanum pennellii HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 74.4
PGSC0003DMG400028317 Solanum tuberosum HOM05D003220 ORTHO05D003944 7.5e-36 154.1 90 74.4
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 9.8e-36 153.7 90 76.7
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 9.8e-36 153.7 90 74.4
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 9.8e-36 153.7 90 73.3
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 9.8e-36 153.7 90 73.3
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 9.8e-36 153.7 90 75.6
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 9.8e-36 153.7 90 75.6
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.3e-35 153.3 90 74.4
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.3e-35 153.3 90 74.4
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.3e-35 153.3 90 75.6
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 1.7e-35 152.9 90 75.6
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 1.7e-35 152.9 90 74.4
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 2.2e-35 152.5 90 74.4
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 2.9e-35 152.1 96 72.9
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 2.9e-35 152.1 90 73.3
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 3.7e-35 151.8 90 74.4
Migut.N00934 Erythranthe guttata HOM05D003220 ORTHO05D003944 3.7e-35 151.8 90 74.4
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 4.9e-35 151.4 86 76.7
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 4.9e-35 151.4 86 76.7
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 73.3
BcaNung07242 Brassica carinata HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 73.3
CANSAT80G2734 Cannabis sativa HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 73.3
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 4.9e-35 151.4 86 76.7
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 72.2
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 74.4
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 74.4
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 74.4
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 4.9e-35 151.4 90 73.3
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 6.4e-35 151.0 90 74.4
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 6.4e-35 151.0 90 74.4
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 6.4e-35 151.0 90 74.4
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 6.4e-35 151.0 90 74.4
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 6.4e-35 151.0 90 74.4
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 6.4e-35 151.0 97 72.2
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 6.4e-35 151.0 97 72.2
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 8.3e-35 150.6 97 72.2
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 8.3e-35 150.6 95 72.6
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 1.1e-34 150.2 90 72.2
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 1.4e-34 149.8 90 72.2
HPP92_001246 Vanilla planifolia HOM05D003220 ORTHO05D003944 1.4e-34 149.8 90 71.1
HPP92_001262 Vanilla planifolia HOM05D003220 ORTHO05D003944 1.4e-34 149.8 90 71.1
CsaV3_1G009540 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.9e-34 149.4 90 72.2
Dinv04868 Davidia involucrata HOM05D003220 ORTHO05D003944 1.9e-34 149.4 95 71.6
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 3.2e-34 148.7 90 73.3
Actinidia25590 Actinidia chinensis HOM05D003220 ORTHO05D003944 1.2e-33 146.7 85 74.1
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 2.1e-33 146.0 119 58.8
ClCG03G003660 Citrullus lanatus HOM05D003220 ORTHO05D003944 2.7e-33 145.6 90 70.0
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 2.7e-33 145.6 93 72.0
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 3.5e-33 145.2 95 69.5
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 3.5e-33 145.2 95 69.5
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 3.5e-33 145.2 95 69.5
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 3.5e-33 145.2 95 69.5
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 4.6e-33 144.8 96 68.8
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 4.6e-33 144.8 96 68.8
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 1.3e-32 143.3 91 72.5
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 1.1e-31 140.2 115 58.3
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 1.9e-31 139.4 109 59.6
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 3.4e-28 128.6 90 66.7
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 9.9e-28 127.1 90 65.6
unitig_750.g28437 Utricularia gibba HOM05D003220 ORTHO05D003944 1.7e-27 126.3 97 63.9
Cc00_g12840 Coffea canephora HOM05D003220 ORTHO05D003944 2.2e-27 125.9 90 63.3
TPR.G22577 Trifolium pratense HOM05D003220 ORTHO05D003944 3.7e-27 125.2 95 62.1
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 7.1e-26 120.9 67 76.1
SalBow2G0412 Salvia bowleyana HOM05D003220 ORTHO05D003944 9.2e-26 120.6 67 79.1
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 1.6e-25 119.8 66 75.8
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 1.6e-25 119.8 66 75.8
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 1.6e-25 119.8 77 72.7
FAN08G0455 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.5e-25 118.6 86 64.0
Aa31LG7G11010 Aethionema arabicum HOM05D003220 ORTHO05D003944 4.6e-25 118.2 90 62.2
FvH4_5g06920 Fragaria vesca HOM05D003220 ORTHO05D003944 4.6e-25 118.2 86 64.0
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 1.7e-24 116.3 67 73.1
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 1.7e-24 116.3 67 71.6
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 2.3e-24 115.9 67 70.1
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 3.9e-24 115.2 67 70.1
SGA_v2.0_scaffold198G41113 Striga asiatica HOM05D003220 ORTHO05D003944 6.6e-24 114.4 66 72.7
Psat2g150200 Pisum sativum HOM05D003220 ORTHO05D003944 5.2e-21 104.8 58 81.0
Cre09.g416050 Chlamydomonas reinhardtii HOM05D003220 ORTHO05D003944 3.4e-20 102.1 87 50.6
PRCOL_00001450 Prasinoderma coloniale HOM05D003220 ORTHO05D003944 1.6e-17 93.2 87 46.0
TPR.G36997 Trifolium pratense HOM05D003220 ORTHO05D003944 1.0e-16 90.5 56 71.4
Cfa022737 Carpinus fangiana HOM05D003220 ORTHO05D003944 1.5e-15 86.7 91 44.0
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 9.6e-15 84.0 90 50.0
Rhsim13G0121700 Rhododendron simsii HOM05D003220 ORTHO05D003944 1.4e-10 70.1 75 53.3
Medtr3g088950 Medicago truncatula HOM05D003220 ORTHO05D000090 5.4e-10 68.2 38 68.4
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 1.0e-08 63.9 39 71.8
TAR628G0744 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.1e-07 60.5 40 65.0
Oeu050445.1 Olea europaea HOM05D003220 ORTHO05D003944 1.3e-06 57.0 87 35.6


User provided reference genes

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