Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.1e-233 813.1 481 100.0
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.1e-147 526.6 501 63.3
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 2.5e-137 493.0 500 60.8
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 5.6e-137 491.9 558 59.0
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 3.1e-135 486.1 511 65.8
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 6.9e-135 485.0 520 58.7
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 3.2e-132 476.1 534 59.4
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 7.1e-132 474.9 511 59.9
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 7.4e-129 464.9 558 55.2
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.3e-128 464.2 495 58.0
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 4.0e-127 459.1 614 50.8
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 5.3e-127 458.8 609 52.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 4.5e-126 455.7 542 58.1
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 5.8e-126 455.3 484 58.5
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 1.7e-125 453.8 503 54.7
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.9e-125 453.0 563 52.6
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.1e-124 451.1 577 57.2
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 7.1e-124 448.4 548 58.8
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 7.1e-124 448.4 558 50.5
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 7.1e-124 448.4 484 59.7
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.8e-122 443.7 513 58.5
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.1e-121 441.0 497 59.4
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.9e-121 440.3 498 59.2
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 1.9e-121 440.3 575 53.6
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 3.3e-121 439.5 553 55.2
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 4.3e-121 439.1 495 58.6
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 5.7e-121 438.7 557 52.4
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 1.3e-120 437.6 648 50.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.8e-120 436.4 554 53.6
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.8e-120 436.4 556 51.1
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 2.4e-119 433.3 594 53.2
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 9.0e-119 431.4 594 51.7
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 1.2e-118 431.0 543 55.8
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.5e-118 430.6 463 63.3
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 2.6e-118 429.9 606 53.1
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 6.5e-117 425.2 496 58.5
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.1e-116 424.5 447 63.5
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.1e-115 420.2 539 53.6
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 7.9e-115 418.3 518 55.8
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 1.4e-114 417.5 543 54.1
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.8e-114 417.2 490 53.9
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 3.0e-114 416.4 560 50.7
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.7e-114 415.2 508 52.6
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.5e-113 413.3 537 55.9
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.3e-113 412.9 593 52.1
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 7.4e-113 411.8 550 52.0
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 3.4e-110 402.9 535 57.4
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 5.9e-110 402.1 581 50.3
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.3e-109 401.0 513 52.6
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 2.2e-109 400.2 493 53.1
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.1e-108 397.9 582 52.9
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 5.5e-108 395.6 487 58.9
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.1e-107 393.7 511 56.0
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 3.6e-107 392.9 522 54.8
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 7.9e-107 391.7 544 56.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.8e-106 390.6 568 52.3
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 3.0e-106 389.8 557 52.8
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 5.1e-106 389.0 566 48.1
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 5.1e-106 389.0 573 50.8
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 5.1e-106 389.0 600 49.7
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.1e-105 387.9 588 50.9
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.6e-105 386.7 499 49.7
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 2.6e-105 386.7 511 56.2
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 4.4e-105 386.0 578 48.8
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 5.7e-105 385.6 507 51.7
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 7.4e-105 385.2 503 56.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.8e-104 383.3 550 47.8
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 8.2e-104 381.7 594 46.6
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.4e-103 380.9 560 51.4
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.4e-103 380.9 510 53.5
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.8e-103 380.6 550 47.6
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 7.0e-103 378.6 513 51.7
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.3e-101 374.4 566 45.2
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 3.8e-101 372.9 550 46.7
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 5.0e-101 372.5 575 47.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 7.2e-100 368.6 559 45.6
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.6e-99 367.5 533 48.2
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.0e-98 364.8 468 52.1
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.8e-98 364.0 502 55.0
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.3e-96 357.8 514 52.9
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 2.2e-96 357.1 494 52.2
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.2e-96 357.1 494 52.2
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.1e-95 354.8 554 50.4
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 7.0e-95 352.1 571 46.9
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.3e-93 347.8 527 51.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 5.5e-92 342.4 540 48.9
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 3.6e-91 339.7 222 77.0
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.0e-90 338.2 372 54.8
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.4e-90 337.8 484 50.0
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 4.0e-90 336.3 578 44.3
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 3.7e-88 329.7 525 45.9
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.3e-88 328.9 482 50.0
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 3.5e-86 323.2 488 55.9
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.1e-83 313.9 293 60.4
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 4.2e-76 289.7 632 40.2
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.2e-73 281.6 501 43.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 2.3e-69 267.3 272 57.7
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.9e-69 266.5 220 63.2
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 7.3e-68 262.3 188 70.2
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 3.4e-65 253.4 148 77.7
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 4.4e-65 253.1 587 37.1
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 2.2e-64 250.8 586 33.1
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 4.9e-64 249.6 148 79.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 4.9e-64 249.6 574 39.7
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 4.9e-64 249.6 149 78.5
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 6.4e-64 249.2 166 74.1
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.9e-63 247.7 165 73.9
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 4.1e-63 246.5 212 61.8
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 7.0e-63 245.7 203 64.0
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 9.2e-63 245.4 276 55.4
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.7e-62 243.8 217 57.1
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.5e-62 243.4 152 77.0
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.0e-61 241.9 158 75.3
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.8e-59 233.8 179 67.6
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.3e-58 230.7 487 44.6
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 5.2e-58 229.6 222 54.5
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 3.7e-56 223.4 149 70.5
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 1.0e-53 215.3 222 56.3
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.1e-52 211.8 416 47.6
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 4.3e-52 209.9 158 69.0
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 2.8e-51 207.2 113 79.6
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 6.2e-51 206.1 113 79.6
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 3.5e-46 190.3 325 50.2
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.0e-45 187.2 374 49.5
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.0e-45 187.2 374 49.5
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.9e-40 170.6 433 34.6
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 2.3e-37 161.0 195 48.2
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.9e-36 157.9 86 79.1
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.9e-36 157.9 86 79.1
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.9e-36 157.9 138 71.0
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 4.0e-34 150.2 280 35.4
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 6.9e-34 149.4 295 52.9
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.2e-33 148.7 140 67.1
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 8.4e-32 142.5 136 68.4
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 1.6e-27 128.3 199 41.7
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.5e-25 121.7 84 67.9
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 4.9e-24 116.7 133 60.9
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 1.1e-23 115.5 178 47.2
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 2.3e-21 107.8 151 46.4
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 7.4e-20 102.8 57 78.9
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 5.8e-17 93.2 66 60.6
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 3.8e-16 90.5 76 67.1
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 2.5e-15 87.8 203 51.2
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.2e-15 87.0 109 45.0
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.7e-14 84.3 86 59.3
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 1.0e-13 82.4 227 43.2
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 2.3e-13 81.3 137 37.2
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 8.2e-11 72.8 64 59.4
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.1e-10 70.9 96 47.9
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 4.1e-10 70.5 149 37.6
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 2.7e-06 57.8 62 64.5
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 4.6e-06 57.0 85 50.6


User provided reference genes

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