Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01013074001 Vitis vinifera HOM05D003840 ORTHO05D004565 3.0e-41 171.4 85 100.0
GSVIVG01014369001 Vitis vinifera HOM05D003840 ORTHO05D004565 9.3e-27 123.2 71 85.9
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 2.1e-23 112.1 71 77.5
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 3.7e-23 111.3 71 77.5
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 3.7e-23 111.3 71 77.5
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 8.2e-23 110.2 71 77.5
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 8.2e-23 110.2 71 77.5
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 1.1e-22 109.8 71 76.1
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 1.8e-22 109.0 71 76.1
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 1.8e-22 109.0 71 77.5
CiPaw.12G120400 Carya illinoinensis HOM05D003840 ORTHO05D004565 3.1e-22 108.2 71 74.6
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 3.1e-22 108.2 71 74.6
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 3.1e-22 108.2 71 74.6
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 4.0e-22 107.8 71 76.1
Atru.chr2.2716 Acer truncatum HOM05D003840 ORTHO05D004565 6.9e-22 107.1 71 73.2
CiPaw.08G146100 Carya illinoinensis HOM05D003840 ORTHO05D004565 6.9e-22 107.1 71 74.6
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 6.9e-22 107.1 71 74.6
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 6.9e-22 107.1 71 74.6
Prupe.4G184700 Prunus persica HOM05D003840 ORTHO05D004565 6.9e-22 107.1 71 74.6
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 9.0e-22 106.7 71 73.2
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 1.5e-21 105.9 71 74.6
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 1.5e-21 105.9 71 73.2
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 1.5e-21 105.9 71 73.2
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 2.0e-21 105.5 71 73.2
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 2.0e-21 105.5 71 73.2
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 2.0e-21 105.5 71 73.2
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 2.0e-21 105.5 71 71.8
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 2.0e-21 105.5 71 71.8
Sc07g0002600 Simmondsia chinensis HOM05D003840 ORTHO05D004565 2.0e-21 105.5 71 73.2
COL.COLO4_09425 Corchorus olitorius HOM05D003840 ORTHO05D004565 2.6e-21 105.1 71 73.2
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 2.6e-21 105.1 71 71.8
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 3.4e-21 104.8 71 73.2
Sabra16G0264000 Salix brachista HOM05D003840 ORTHO05D004565 4.5e-21 104.4 71 74.6
CANSAT56G3533 Cannabis sativa HOM05D003840 ORTHO05D004565 5.8e-21 104.0 71 70.4
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 5.8e-21 104.0 71 71.8
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 5.8e-21 104.0 71 73.2
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 7.6e-21 103.6 71 73.2
Oeu060544.1 Olea europaea HOM05D003840 ORTHO05D004565 1.0e-20 103.2 71 74.6
SalBow7G4534 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.0e-20 103.2 71 74.6
Hund22938 Selenicereus undatus HOM05D003840 ORTHO05D004565 1.0e-20 103.2 70 74.3
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 1.3e-20 102.8 71 70.4
Cfa020553 Carpinus fangiana HOM05D003840 ORTHO05D004565 1.3e-20 102.8 71 71.8
SGA_v2.0_scaffold73G24291 Striga asiatica HOM05D003840 ORTHO05D004565 1.3e-20 102.8 71 73.2
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 1.7e-20 102.4 71 71.8
SalBow7G0398 Salvia bowleyana HOM05D003840 ORTHO05D004565 1.7e-20 102.4 71 74.6
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea HOM05D003840 ORTHO05D004565 2.2e-20 102.1 71 71.8
Dinv08310 Davidia involucrata HOM05D003840 ORTHO05D004565 2.2e-20 102.1 71 71.8
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 2.2e-20 102.1 71 73.2
EL10Ac4g08140 Beta vulgaris HOM05D003840 ORTHO05D004565 2.9e-20 101.7 70 71.4
Haze_09463 Corylus avellana HOM05D003840 ORTHO05D004565 2.9e-20 101.7 71 70.4
Ah.02g127530 Amaranthus hybridus HOM05D003840 ORTHO05D004565 3.8e-20 101.3 71 71.8
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 3.8e-20 101.3 71 74.6
FvH4_5g29580 Fragaria vesca HOM05D003840 ORTHO05D004565 3.8e-20 101.3 71 71.8
FAN04G1578 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.8e-20 101.3 71 71.8
FAN13G0946 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.8e-20 101.3 71 71.8
FAN18G3753 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.8e-20 101.3 71 71.8
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 3.8e-20 101.3 71 74.6
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 4.9e-20 100.9 71 73.2
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea HOM05D003840 ORTHO05D004565 6.5e-20 100.5 71 70.4
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 6.5e-20 100.5 71 71.8
TPR.G28203 Trifolium pratense HOM05D003840 ORTHO05D004565 6.5e-20 100.5 72 72.2
TWI53G0481 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 6.5e-20 100.5 71 71.8
HPP92_018299 Vanilla planifolia HOM05D003840 ORTHO05D004565 6.5e-20 100.5 71 69.0
HPP92_027892 Vanilla planifolia HOM05D003840 ORTHO05D004565 6.5e-20 100.5 71 69.0
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 1.4e-19 99.4 71 73.2
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 1.9e-19 99.0 71 70.4
Aqoxy4G01004 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 2.5e-19 98.6 71 70.4
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 2.5e-19 98.6 71 69.0
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 2.5e-19 98.6 71 73.2
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 2.5e-19 98.6 71 69.0
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 2.5e-19 98.6 70 70.0
Ah.03g144680 Amaranthus hybridus HOM05D003840 ORTHO05D004565 3.2e-19 98.2 71 70.4
RcHm_v2.0_Chr7g0222551 Rosa chinensis HOM05D003840 ORTHO05D004565 3.2e-19 98.2 71 69.0
THA.LOC104818066 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 3.2e-19 98.2 72 70.8
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 4.2e-19 97.8 71 70.4
HanXRQChr13g0407421 Helianthus annuus HOM05D003840 ORTHO05D004565 4.2e-19 97.8 71 70.4
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 4.2e-19 97.8 70 70.0
THA.LOC104810482 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 5.5e-19 97.4 72 70.8
Aqoxy3G02137 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 9.3e-19 96.7 71 69.0
PSO782G4342 Papaver somniferum HOM05D003840 ORTHO05D004565 9.3e-19 96.7 71 67.6
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 9.3e-19 96.7 71 70.4
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 2.1e-18 95.5 71 67.6
Zm00001eb016990 Zea mays HOM05D003840 ORTHO05D004565 2.1e-18 95.5 70 70.0
AL1G61320 Arabidopsis lyrata HOM05D003840 ORTHO05D004565 2.7e-18 95.1 72 69.4
Carub.0001s4212 Capsella rubella HOM05D003840 ORTHO05D004565 2.7e-18 95.1 72 68.1
AT1G52980 Arabidopsis thaliana HOM05D003840 ORTHO05D004565 3.5e-18 94.7 72 69.4
Lj3g0017419 Lotus japonicus HOM05D003840 ORTHO05D004565 3.5e-18 94.7 67 71.6
Os03g0352400 Oryza sativa ssp. japonica HOM05D003840 ORTHO05D004565 3.5e-18 94.7 71 69.0
Migut.M00853 Erythranthe guttata HOM05D003840 ORTHO05D004565 4.6e-18 94.4 71 70.4
SEGI_28100 Sequoiadendron giganteum HOM05D003840 ORTHO05D004565 4.6e-18 94.4 67 68.7
unitig_46.g18324 Utricularia gibba HOM05D003840 ORTHO05D004565 4.6e-18 94.4 70 65.7
BcaC08g44019 Brassica carinata HOM05D003840 ORTHO05D004565 1.0e-17 93.2 72 69.4
Aa31LG10G2130 Aethionema arabicum HOM05D003840 ORTHO05D004565 1.8e-17 92.4 71 67.6
BcaB02g10967 Brassica carinata HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
BcaB07g33370 Brassica carinata HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
BcaC08g43481 Brassica carinata HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
A06p01380 Brassica napus HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
C06p08670 Brassica napus HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
BraA06t23360Z Brassica rapa HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
AUR62034278 Chenopodium quinoa HOM05D003840 ORTHO05D004565 1.8e-17 92.4 67 67.2
Thhalv10011345m.g Eutrema salsugineum HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
Sp1g39540 Schrenkiella parvula HOM05D003840 ORTHO05D004565 1.8e-17 92.4 72 69.4
TWI73G0301 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 1.8e-17 92.4 71 64.8
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 2.3e-17 92.0 71 67.6
Nitab4.5_0011553g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 2.3e-17 92.0 71 67.6
ECA240G0083 Erigeron canadensis HOM05D003840 ORTHO05D004565 3.0e-17 91.7 71 66.2
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 3.0e-17 91.7 71 67.6
Peaxi162Scf00069g01212 Petunia axillaris HOM05D003840 ORTHO05D004565 3.9e-17 91.3 69 69.6
CARHR043180 Cardamine hirsuta HOM05D003840 ORTHO05D004565 5.1e-17 90.9 72 68.1
Solyc07g063270.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 5.1e-17 90.9 71 66.2
Sopen07g031450 Solanum pennellii HOM05D003840 ORTHO05D004565 5.1e-17 90.9 71 66.2
Lsat_1_v5_gn_9_97121 Lactuca sativa HOM05D003840 ORTHO05D004565 8.7e-17 90.1 67 68.7
BolC6t36608H Brassica oleracea HOM05D003840 ORTHO05D004565 1.1e-16 89.7 72 68.1
MD10G1052400 Malus domestica HOM05D003840 ORTHO05D004565 1.1e-16 89.7 71 67.6
C06p14330 Brassica napus HOM05D003840 ORTHO05D004565 1.5e-16 89.4 72 68.1
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 3.3e-16 88.2 72 68.1
DCAR_013090 Daucus carota HOM05D003840 ORTHO05D004565 4.3e-16 87.8 67 68.7
ATR0680G057 Amborella trichopoda HOM05D003840 ORTHO05D004565 1.6e-15 85.9 67 64.2
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 2.8e-15 85.1 55 78.2
VMungo0540G0346 Vigna mungo HOM05D003840 ORTHO05D004565 4.1e-14 81.3 54 75.9
CARHR032500 Cardamine hirsuta HOM05D003840 ORTHO05D004565 5.3e-14 80.9 67 62.7
Mapoly0122s0018 Marchantia polymorpha HOM05D003840 ORTHO05D004565 2.0e-13 79.0 67 58.2
Lj4g0007507 Lotus japonicus HOM05D003840 ORTHO05D004565 1.0e-12 76.6 73 58.9
SHI05032 Sapria himalayana HOM05D003840 ORTHO05D004565 1.3e-12 76.3 71 56.3
RcHm_v2.0_Chr4g0433481 Rosa chinensis HOM05D003840 ORTHO05D004565 1.7e-12 75.9 51 70.6
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 3.8e-12 74.7 52 69.2
AagrBONN_evm.TU.Sc2ySwM_117.381 Anthoceros agrestis HOM05D003840 ORTHO05D004565 8.5e-12 73.6 70 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5148 Anthoceros agrestis HOM05D003840 ORTHO05D004565 8.5e-12 73.6 70 57.1
SGA_v2.0_scaffold34G13732 Striga asiatica HOM05D003840 ORTHO05D004565 1.2e-10 69.7 73 56.2
Pp3c1_3230 Physcomitrium patens HOM05D003840 ORTHO05D004565 3.6e-10 68.2 67 52.2
SMO367G1211 Selaginella moellendorffii HOM05D003840 ORTHO05D004565 3.6e-10 68.2 40 82.5
CBR_g28541 Chara braunii HOM05D003840 ORTHO05D004565 1.0e-09 66.6 70 55.7
FAN05G0276 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.4e-09 66.2 42 78.6
Lj4g0015469 Lotus japonicus HOM05D003840 ORTHO05D004565 8.8e-09 63.5 61 60.7
PSO210G3517 Papaver somniferum HOM05D003840 ORTHO05D004565 1.7e-07 59.3 51 64.7
PSO832G2656 Papaver somniferum HOM05D003840 ORTHO05D004565 3.7e-07 58.2 51 62.7
MCO07G526 Micromonas commoda HOM05D003840 ORTHO05D004565 6.9e-06 53.9 39 59.0


User provided reference genes

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