Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 2.1e-79 298.9 141 100.0
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 6.7e-38 161.0 82 91.5
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 6.5e-09 64.7 66 53.0
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.1e-08 63.9 49 63.3
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.5e-08 63.5 44 63.6
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 3.2e-08 62.4 44 61.4
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 3.2e-08 62.4 44 63.6
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.2e-08 62.0 66 51.5
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.2e-08 62.0 66 51.5
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.2e-08 62.0 44 61.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 5.5e-08 61.6 41 68.3
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 5.5e-08 61.6 44 63.6
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 7.2e-08 61.2 44 61.4
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 7.2e-08 61.2 49 61.2
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 1.2e-07 60.5 66 47.0
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.2e-07 60.5 49 61.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.2e-07 60.5 37 67.6
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.7e-07 59.3 49 59.2
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.6e-07 58.9 44 61.4
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 3.6e-07 58.9 49 59.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 3.6e-07 58.9 49 59.2
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 4.7e-07 58.5 48 54.2
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 6.1e-07 58.2 44 54.5
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 6.1e-07 58.2 49 57.1
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 6.1e-07 58.2 44 56.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.1e-07 58.2 49 57.1
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 8.0e-07 57.8 36 69.4
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 8.0e-07 57.8 36 69.4
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 8.0e-07 57.8 49 57.1
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 8.0e-07 57.8 44 56.8
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 8.0e-07 57.8 49 57.1
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.0e-07 57.8 49 57.1
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 8.0e-07 57.8 44 56.8
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 8.0e-07 57.8 49 57.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 8.0e-07 57.8 49 57.1
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 8.0e-07 57.8 44 56.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.0e-06 57.4 49 57.1
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.0e-06 57.4 37 67.6
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.4e-06 57.0 44 56.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.4e-06 57.0 44 56.8
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.8e-06 56.6 44 56.8
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.8e-06 56.6 44 56.8
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.8e-06 56.6 49 53.1
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 2.3e-06 56.2 49 55.1
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.3e-06 56.2 41 61.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.3e-06 56.2 41 61.0
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 3.0e-06 55.8 44 54.5
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-06 55.8 44 54.5
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-06 55.8 44 54.5
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-06 55.8 44 54.5
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-06 55.8 44 54.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.0e-06 55.8 41 61.0
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 3.0e-06 55.8 49 53.1
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 3.0e-06 55.8 44 54.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 3.0e-06 55.8 41 63.4
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.0e-06 55.8 49 55.1
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.0e-06 55.5 37 62.2
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.2e-06 55.1 44 52.3
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 5.2e-06 55.1 46 56.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 5.2e-06 55.1 46 56.5
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 5.2e-06 55.1 46 56.5
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 5.2e-06 55.1 49 53.1
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 6.7e-06 54.7 37 62.2
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.7e-06 54.7 44 50.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 8.8e-06 54.3 49 55.1


User provided reference genes

Program Settings