Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 0.0e+00 1278.1 653 100.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.4e-287 991.9 658 76.1
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.4e-276 955.3 658 74.3
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 3.2e-276 954.9 658 74.0
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 9.3e-276 953.4 657 74.0
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.2e-272 940.6 651 72.7
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 3.1e-271 938.3 653 73.0
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 2.2e-269 932.2 657 71.2
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 5.3e-263 911.0 654 71.1
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 9.0e-263 910.2 652 69.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 5.8e-262 907.5 658 71.1
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.9e-260 902.5 660 68.9
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 5.5e-260 901.0 660 69.1
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 9.3e-260 900.2 650 69.4
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 2.1e-259 899.0 647 70.2
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 3.5e-259 898.3 660 69.5
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.0e-258 896.7 649 68.7
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 2.3e-258 895.6 659 71.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 6.3e-256 887.5 657 70.2
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 2.4e-255 885.6 659 67.2
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 6.9e-255 884.0 659 70.0
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 9.0e-255 883.6 649 68.4
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 6.5e-253 877.5 656 68.4
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.1e-252 876.7 653 67.2
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.4e-252 876.3 649 68.1
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 2.5e-252 875.5 649 67.8
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 5.5e-252 874.4 646 68.1
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 4.6e-251 871.3 649 67.8
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 4.3e-249 864.8 651 66.5
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.7e-248 861.7 656 66.6
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.1e-247 860.1 651 67.0
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.4e-247 859.0 656 66.6
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.0e-246 855.9 661 65.4
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.4e-246 855.1 657 66.2
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 3.4e-246 855.1 659 66.2
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 5.9e-246 854.4 657 66.5
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 5.9e-246 854.4 653 66.3
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 8.5e-245 850.5 644 66.1
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 9.4e-244 847.0 656 65.2
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.2e-243 846.7 654 65.9
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 1.6e-243 846.3 657 66.7
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 4.7e-243 844.7 656 65.2
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 6.1e-243 844.3 648 66.2
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 6.1e-243 844.3 656 65.4
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 7.9e-243 844.0 657 66.2
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 7.9e-243 844.0 626 67.6
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.0e-242 843.6 625 68.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.4e-242 843.2 654 65.6
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.0e-241 839.3 656 64.9
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.6e-241 839.0 656 65.4
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 5.7e-241 837.8 662 65.1
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 1.7e-240 836.3 659 66.2
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 2.8e-240 835.5 657 63.5
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 3.7e-240 835.1 666 64.6
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 8.2e-240 833.9 659 64.8
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 2.4e-239 832.4 680 63.1
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 3.1e-239 832.0 658 64.0
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 5.3e-239 831.2 659 64.6
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 1.4e-236 823.2 657 64.5
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 5.5e-236 821.2 652 63.2
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 6.1e-235 817.8 653 65.1
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 5.2e-234 814.7 659 64.2
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.1e-233 813.5 659 64.0
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 3.3e-233 812.0 656 62.0
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 4.4e-233 811.6 671 62.7
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.2e-232 809.3 648 64.5
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.1e-231 807.0 646 63.2
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.4e-231 806.6 647 63.8
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.7e-229 799.7 657 63.6
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.9e-229 798.9 650 62.2
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 8.8e-226 787.3 655 60.9
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 4.4e-225 785.0 666 60.5
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 5.7e-225 784.6 654 60.4
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 7.0e-223 777.7 657 60.3
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 8.5e-221 770.8 655 59.7
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.2e-220 768.5 651 59.8
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 7.2e-220 767.7 658 59.1
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.7e-219 765.8 657 59.2
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 8.8e-218 760.8 661 59.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 9.8e-217 757.3 652 59.7
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 9.8e-217 757.3 652 59.5
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 3.7e-216 755.4 652 59.5
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.1e-215 753.8 644 63.5
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 2.4e-215 752.7 655 57.1
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.0e-214 749.6 656 59.1
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.0e-214 749.6 656 59.1
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 1.8e-210 736.5 653 58.5
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 4.0e-210 735.3 655 58.8
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.2e-209 733.8 658 60.9
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.4e-209 731.9 666 56.9
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 5.7e-209 731.5 648 57.6
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.6e-206 723.4 653 57.9
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 3.5e-206 722.2 508 73.4
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.6e-201 706.1 487 72.3
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 4.1e-199 698.7 658 56.8
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.1e-196 690.6 683 53.1
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 3.1e-194 682.6 645 57.4
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.3e-186 656.4 667 53.7
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.2e-182 644.0 661 52.5
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.4e-146 524.2 527 51.8
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 2.1e-142 510.4 478 56.1
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.8e-138 497.3 419 62.1
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.0e-136 491.5 619 47.2
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.9e-136 490.0 356 69.4
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 5.3e-130 469.2 355 66.2
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 1.3e-123 448.0 668 38.5
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.6e-110 404.4 656 36.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.6e-102 377.9 665 36.4
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 8.3e-99 365.5 285 63.5
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 5.2e-93 346.3 507 40.4
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.8e-91 340.5 360 49.7
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.5e-87 327.4 271 58.3
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 8.9e-77 292.4 270 56.7
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 9.2e-74 282.3 355 43.7
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.1e-73 281.2 762 28.9
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 5.2e-69 266.5 263 54.0
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 6.0e-65 253.1 701 27.8
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 8.1e-54 216.1 218 55.5
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 3.4e-36 157.5 238 39.1
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 2.5e-34 151.4 128 64.1
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-32 145.6 80 80.0
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 3.0e-24 117.9 205 33.2
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.3e-22 112.5 162 38.9
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 9.0e-21 106.3 86 51.2
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.5e-20 105.5 99 53.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 4.5e-20 104.0 214 32.2
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.0e-19 102.8 228 31.1
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.0e-19 100.5 103 51.5
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.9e-18 98.6 65 76.9
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.5e-18 98.2 73 63.0
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.2e-17 95.9 166 35.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.0e-12 78.6 65 61.5
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 5.9e-12 77.0 97 45.4
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 6.5e-11 73.6 98 40.8
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 4.7e-09 67.4 49 67.3
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 4.8e-06 57.4 47 57.4
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 6.3e-06 57.0 41 75.6


User provided reference genes

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