Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 0.0e+00 1347.4 691 100.0
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.6e-172 610.5 839 48.6
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 6.8e-168 595.1 968 41.1
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 9.8e-167 591.3 966 41.7
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.8e-165 587.0 976 41.2
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 2.3e-163 580.1 966 40.7
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.9e-162 577.0 963 42.0
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 1.9e-162 577.0 968 41.3
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 5.6e-162 575.5 966 41.6
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.2e-161 574.3 956 41.8
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.2e-161 574.3 979 40.6
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.6e-161 573.9 977 41.6
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 4.0e-160 569.3 925 41.9
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 6.8e-160 568.5 965 41.6
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.6e-159 566.6 967 40.4
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 4.4e-159 565.8 967 40.4
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 7.5e-159 565.1 966 41.0
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 2.2e-158 563.5 955 40.8
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.9e-158 563.1 953 41.4
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 4.9e-158 562.4 962 40.1
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 3.2e-157 559.7 961 40.5
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 7.0e-157 558.5 967 39.1
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.2e-156 557.8 963 40.6
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.1e-156 557.0 967 39.0
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 6.6e-155 552.0 933 39.8
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.5e-154 550.8 971 40.1
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 1.9e-154 550.4 970 39.7
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 5.6e-154 548.9 951 40.4
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 6.2e-153 545.4 952 40.0
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.4e-152 544.3 962 39.9
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 8.9e-152 541.6 963 39.0
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 8.9e-152 541.6 954 39.8
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 4.4e-151 539.3 951 40.4
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 1.3e-150 537.7 966 40.1
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.3e-150 537.7 959 39.8
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 1.7e-150 537.3 938 39.6
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.4e-149 534.3 1019 38.4
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.9e-149 533.9 956 39.7
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 5.4e-149 532.3 964 39.8
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 9.2e-149 531.6 994 38.1
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.6e-148 530.8 965 39.7
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 2.7e-148 530.0 954 39.4
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 6.0e-148 528.9 973 38.6
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 1.0e-147 528.1 981 39.7
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 1.1e-146 524.6 962 38.9
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.5e-146 524.2 981 38.0
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 2.5e-146 523.5 959 38.8
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 4.3e-146 522.7 959 39.5
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 4.3e-146 522.7 966 38.8
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.3e-146 521.9 959 39.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 1.2e-145 521.2 969 38.0
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.4e-144 516.9 983 38.7
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 2.4e-144 516.9 960 39.8
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 4.0e-144 516.2 959 38.1
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 5.2e-144 515.8 974 37.8
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 3.4e-143 513.1 966 39.2
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 4.4e-143 512.7 957 38.7
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 4.9e-142 509.2 993 37.2
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 4.9e-142 509.2 959 38.3
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 6.4e-142 508.8 963 38.4
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.4e-141 507.7 962 38.7
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.4e-141 506.9 971 37.4
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 3.2e-141 506.5 923 39.8
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 3.2e-141 506.5 955 38.7
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 2.1e-140 503.8 923 39.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 3.5e-140 503.1 959 38.0
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 1.3e-139 501.1 963 38.9
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.9e-138 497.3 959 37.6
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.8e-134 483.0 964 36.9
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 4.9e-134 482.6 967 36.5
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 4.9e-134 482.6 957 37.3
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 8.4e-134 481.9 976 37.4
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 1.4e-133 481.1 926 38.6
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.1e-130 471.5 793 41.9
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 4.3e-130 469.5 967 36.3
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 5.6e-130 469.2 962 36.2
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 5.6e-130 469.2 1019 37.4
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.6e-129 467.6 964 36.2
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 2.4e-128 463.8 703 43.0
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 3.8e-126 456.4 950 35.8
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 9.3e-125 451.8 704 41.9
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 3.5e-124 449.9 972 35.8
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.5e-122 443.7 887 37.5
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 5.6e-122 442.6 905 37.1
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 4.8e-121 439.5 994 34.1
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 1.1e-120 438.3 519 51.8
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.8e-120 437.6 967 35.9
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.8e-120 437.6 967 35.9
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 4.0e-120 436.4 907 36.2
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 6.9e-120 435.6 969 35.4
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.2e-119 434.9 965 35.6
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 2.0e-119 434.1 900 36.9
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 2.6e-119 433.7 901 36.3
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 2.6e-119 433.7 901 36.3
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 3.4e-119 433.3 900 36.8
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 3.4e-119 433.3 907 36.2
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 2.9e-118 430.3 948 35.3
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.9e-118 429.5 980 35.0
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 6.7e-115 419.1 1010 32.8
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.8e-105 387.1 1003 30.8
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.8e-104 384.4 726 37.3
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 1.2e-103 381.7 1018 31.5
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 2.6e-103 380.6 949 32.1
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.5e-98 364.8 895 31.7
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 2.2e-97 360.9 479 45.9
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 4.7e-92 343.2 623 39.5
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 3.9e-91 340.1 704 34.5
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 8.2e-81 305.8 886 30.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.5e-74 285.0 494 39.5
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 1.7e-70 271.6 280 54.6
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 4.2e-69 266.9 575 35.8
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 1.3e-62 245.4 237 55.7
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.3e-62 245.4 267 50.9
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 3.7e-57 227.3 237 53.2
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.9e-54 217.6 535 32.5
Nn8g39133 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.9e-30 137.5 123 59.3
Nn8g39147 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.9e-30 137.5 123 59.3
vmacro22218 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 3.8e-25 120.9 105 62.9
C02p22550 Brassica napus HOM05D002270 ORTHO05D002866 1.9e-21 108.6 86 67.4
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 8.1e-20 103.2 140 42.1
AagrBONN_evm.TU.Sc2ySwM_117.1507 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.0e-18 98.6 150 39.3
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 7.6e-18 96.7 51 86.3
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 2.9e-17 94.7 138 37.0
Psat3g019920 Pisum sativum HOM05D002270 ORTHO05D002866 6.4e-17 93.6 95 49.5
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 8.4e-17 93.2 50 84.0
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 8.4e-17 93.2 50 84.0
Cpa.g.sc30.11 Carica papaya HOM05D002270 ORTHO05D002866 3.5e-15 87.8 55 72.7
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 6.0e-15 87.0 152 35.5
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 7.8e-15 86.7 50 78.0
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 1.3e-14 85.9 173 33.5
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.7e-14 85.5 205 31.7
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.0e-14 84.7 99 45.5
C02p22530 Brassica napus HOM05D002270 ORTHO05D002866 8.7e-14 83.2 50 74.0
BolC2t08407H Brassica oleracea HOM05D002270 ORTHO05D002866 8.7e-14 83.2 50 74.0
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 1.1e-13 82.8 211 29.9
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 4.8e-12 77.4 164 30.5
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.4e-11 75.9 156 35.9
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.4e-11 75.1 152 33.6
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 7.6e-10 70.1 148 31.8
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 2.2e-09 68.6 62 61.3
Psat0s3488g0040 Pisum sativum HOM05D002270 ORTHO05D030496 2.2e-09 68.6 41 82.9
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 4.9e-09 67.4 52 69.2
arahy.Tifrunner.gnm1.ann1.X0CJR3 Arachis hypogaea HOM05D000682 ORTHO05D000510 6.4e-09 67.0 43 74.4
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 1.1e-08 66.2 41 78.0
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 5.1e-06 57.4 33 84.8


User provided reference genes

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