Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 4.7e-185 651.0 314 100.0
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 1.1e-136 490.3 311 72.3
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.5e-135 486.5 312 73.4
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.0e-135 486.1 311 73.6
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.4e-133 479.9 312 72.4
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.9e-133 479.6 319 71.2
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-133 478.8 313 71.9
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.2e-133 478.8 313 71.9
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 7.2e-133 477.6 324 70.7
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 7.2e-133 477.6 324 70.7
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.2e-132 476.9 311 72.0
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 3.6e-132 475.3 310 72.3
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.9e-132 474.2 313 70.9
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.0e-131 473.8 312 71.8
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.3e-131 472.6 303 71.9
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 6.7e-131 471.1 316 70.9
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 8.8e-131 470.7 331 69.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.3e-129 466.8 323 69.3
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.7e-129 466.5 309 68.9
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 2.2e-129 466.1 306 71.9
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 9.4e-125 450.7 304 68.4
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 3.6e-124 448.7 310 65.8
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 6.1e-124 448.0 314 66.9
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.0e-123 447.2 323 65.6
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 2.3e-123 446.0 310 65.2
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 3.0e-123 445.7 312 66.7
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 4.0e-123 445.3 308 67.9
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 5.2e-123 444.9 312 67.6
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 2.0e-122 443.0 306 69.9
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 2.6e-122 442.6 315 67.0
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 2.6e-122 442.6 292 70.9
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 3.3e-122 442.2 302 67.5
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.8e-121 438.3 311 65.0
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 6.3e-121 438.0 313 67.4
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 8.2e-121 437.6 315 66.0
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 8.2e-121 437.6 304 65.5
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.1e-120 437.2 304 67.1
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 1.4e-120 436.8 297 69.4
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 2.4e-120 436.0 307 69.1
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 4.1e-120 435.3 317 65.0
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 4.1e-120 435.3 321 65.4
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.6e-119 433.3 308 65.3
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.0e-118 430.6 302 66.9
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 2.5e-117 426.0 310 63.9
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 2.5e-117 426.0 296 69.3
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 3.2e-117 425.6 311 65.0
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.2e-117 425.6 310 64.2
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.2e-116 423.7 307 64.5
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.6e-116 423.3 295 67.1
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.6e-116 423.3 303 67.0
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 4.7e-116 421.8 289 68.2
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 4.7e-116 421.8 313 63.9
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 6.1e-116 421.4 316 64.9
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 3.0e-115 419.1 307 63.8
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 9.8e-114 414.1 326 61.0
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.7e-113 413.3 303 65.7
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.4e-112 409.5 290 65.9
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 9.1e-112 407.5 290 65.2
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.6e-111 406.8 294 65.6
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.3e-110 403.7 396 53.5
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 2.2e-110 402.9 307 62.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 2.5e-109 399.4 314 61.5
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.1e-108 396.4 306 60.8
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 8.0e-108 394.4 306 60.5
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-107 393.3 299 61.2
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-107 393.3 299 61.2
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-107 393.3 299 61.2
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.8e-107 393.3 299 61.2
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 4.0e-107 392.1 324 58.0
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.7e-105 386.7 310 62.9
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 2.2e-105 386.3 295 60.3
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 2.2e-105 386.3 247 72.5
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.2e-105 386.3 297 62.0
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 4.9e-105 385.2 306 59.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.6e-103 380.2 247 72.1
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.0e-102 377.5 296 61.5
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.9e-101 373.2 325 56.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 3.3e-101 372.5 319 58.3
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 3.3e-101 372.5 298 61.1
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 3.3e-101 372.5 298 61.1
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 1.7e-94 350.1 316 57.9
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 5.6e-93 345.1 315 54.0
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 8.0e-92 341.3 317 54.9
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 4.4e-90 335.5 249 64.3
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 5.4e-88 328.6 280 59.3
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 7.0e-88 328.2 261 62.5
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 7.0e-88 328.2 227 66.5
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.3e-86 323.9 211 72.0
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 6.6e-86 321.6 283 55.5
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 4.0e-83 312.4 313 54.3
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 4.1e-80 302.4 288 52.8
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 5.4e-80 302.0 291 52.6
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 3.0e-78 296.2 216 64.8
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.5e-77 293.1 266 56.0
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.7e-71 273.1 240 57.1
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.7e-70 270.4 192 69.8
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.1e-70 268.9 193 65.8
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.9e-69 266.9 184 70.7
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.5e-69 266.5 192 65.1
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.3e-69 265.0 203 61.6
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.6e-69 264.6 192 65.1
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-68 263.8 192 64.6
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.1e-68 263.5 192 65.1
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 3.6e-68 262.7 212 58.5
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 3.8e-65 252.7 230 55.7
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 6.4e-65 251.9 292 45.9
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.5e-61 240.7 402 37.6
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-60 237.3 192 59.9
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.4e-56 223.4 193 57.5
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.2e-56 222.6 194 58.2
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.1e-53 214.5 206 54.9
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.3e-44 184.5 109 73.4
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.7e-44 183.0 104 78.8
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 4.8e-44 182.6 291 38.1
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 8.1e-44 181.8 104 77.9
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 2.4e-43 180.3 307 37.1
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.1e-40 171.4 123 63.4
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.9e-40 170.6 121 64.5
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.1e-39 167.2 189 46.0
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.5e-37 160.2 109 67.0
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 7.4e-37 158.7 186 46.8
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.8e-36 156.8 103 71.8
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 6.5e-33 145.6 268 34.3
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 3.6e-31 139.8 121 54.5
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 4.8e-28 129.4 287 30.7
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.0e-26 124.0 119 51.3
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 5.5e-24 115.9 65 80.0
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 5.3e-19 99.4 91 51.6
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 6.9e-19 99.0 90 52.2
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 4.7e-15 86.3 45 82.2
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 1.7e-09 67.8 57 61.4
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.2e-07 61.6 39 64.1
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 2.7e-07 60.5 94 43.6


User provided reference genes

Program Settings