Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.2e-305 1052.4 528 100.0
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 2.2e-251 872.1 528 81.4
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.6e-246 855.9 528 79.7
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 7.6e-244 847.0 529 79.4
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.2e-243 845.5 528 79.4
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 2.2e-243 845.5 528 79.4
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.7e-240 835.9 528 79.2
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.5e-239 832.0 529 78.8
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.8e-237 825.9 529 78.1
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 6.9e-237 823.9 529 78.8
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.2e-236 823.2 528 76.3
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 2.0e-236 822.4 528 76.9
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 2.6e-236 822.0 528 76.9
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 4.9e-235 817.8 528 77.7
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 9.3e-234 813.5 528 76.3
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 3.9e-232 808.1 530 76.2
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 3.9e-232 808.1 528 76.9
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 2.5e-231 805.4 526 75.5
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 5.6e-231 804.3 528 76.7
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 2.1e-230 802.4 531 76.3
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 2.1e-230 802.4 528 76.9
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 2.8e-230 802.0 526 76.0
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 3.7e-230 801.6 528 76.9
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 4.8e-230 801.2 531 75.5
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 6.2e-230 800.8 528 76.3
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.4e-229 799.7 530 76.4
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.0e-229 798.1 530 75.3
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 4.0e-229 798.1 530 75.1
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 6.9e-229 797.3 528 75.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 5.8e-228 794.3 528 75.6
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 7.6e-228 793.9 530 75.8
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.1e-226 790.0 528 75.6
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 3.5e-225 785.0 534 73.2
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.8e-224 782.7 528 74.6
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 2.3e-224 782.3 524 74.4
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 5.6e-223 777.7 530 74.5
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 2.1e-222 775.8 519 74.2
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.8e-222 775.4 528 73.3
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.8e-221 772.7 518 75.7
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 1.2e-220 770.0 529 71.6
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 1.5e-220 769.6 571 69.0
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.0e-220 769.2 528 73.5
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 2.6e-220 768.8 580 68.3
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 5.8e-220 767.7 530 72.8
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.4e-218 763.1 529 72.6
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 3.2e-218 761.9 528 71.4
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 7.1e-218 760.8 530 72.6
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 9.3e-218 760.4 526 74.3
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 4.6e-217 758.1 521 73.1
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 6.0e-217 757.7 526 73.4
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 6.0e-217 757.7 539 70.5
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 7.9e-217 757.3 526 74.3
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 2.3e-216 755.7 530 71.7
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 6.3e-214 747.7 533 71.1
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 8.2e-214 747.3 499 76.8
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 4.1e-213 745.0 518 73.6
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 5.0e-211 738.0 528 70.8
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.4e-210 736.5 529 70.1
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 3.6e-209 731.9 560 68.2
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 3.0e-208 728.8 528 69.1
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.7e-206 723.0 525 68.0
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 2.2e-206 722.6 531 68.9
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 3.7e-206 721.8 525 67.4
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.7e-206 721.8 518 71.0
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 2.4e-205 719.2 528 68.6
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 3.1e-205 718.8 528 67.6
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.8e-203 711.8 519 68.6
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 3.8e-203 711.8 481 74.8
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 5.5e-202 708.0 519 68.4
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 6.1e-201 704.5 538 67.5
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 6.7e-200 701.0 523 69.0
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 2.0e-199 699.5 530 67.7
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.6e-199 699.1 530 67.7
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 5.7e-199 698.0 530 68.1
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 5.7e-199 698.0 530 67.5
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 9.7e-199 697.2 530 67.7
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 2.2e-198 696.0 537 67.0
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.4e-197 693.3 520 67.5
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.8e-197 693.0 530 67.5
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.4e-197 692.6 530 67.2
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.1e-197 692.2 530 67.7
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 3.4e-196 688.7 528 68.6
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.0e-195 687.2 520 67.9
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.3e-195 686.8 530 67.4
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 2.2e-195 686.0 519 67.6
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 3.8e-195 685.3 517 67.9
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.2e-194 681.8 519 67.2
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.0e-192 677.2 521 66.6
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.0e-192 677.2 521 67.0
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.4e-192 676.8 521 67.0
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.8e-192 676.4 518 66.8
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 8.8e-192 674.1 521 66.8
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 5.7e-191 671.4 527 64.9
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 9.7e-191 670.6 442 76.0
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 6.3e-190 667.9 531 66.5
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.1e-189 667.2 519 64.7
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 7.0e-189 664.5 519 64.9
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 7.0e-189 664.5 528 64.8
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 1.1e-186 657.1 551 63.7
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.4e-184 650.2 528 63.6
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 4.0e-184 648.7 534 62.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.0e-183 646.4 445 73.5
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 4.8e-182 641.7 526 64.1
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.9e-178 629.8 443 71.1
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 7.5e-175 617.8 528 61.0
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 2.7e-172 609.4 531 59.3
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 5.9e-172 608.2 521 62.4
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 5.0e-163 578.6 463 65.7
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 6.1e-161 571.6 512 60.2
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 4.6e-156 555.4 350 78.0
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 1.3e-134 484.2 466 56.7
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 3.0e-131 473.0 414 59.9
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.9e-130 470.3 540 48.7
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 4.7e-129 465.7 395 58.7
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 7.1e-125 451.8 525 47.2
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 3.2e-117 426.4 517 44.7
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 2.6e-111 406.8 488 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 2.4e-104 383.6 489 45.2
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 2.3e-67 260.8 139 92.1
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 2.0e-63 247.7 445 40.0
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 2.9e-46 190.7 127 72.4
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 9.5e-37 159.1 150 60.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-35 155.2 273 39.9
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 9.5e-29 132.5 79 77.2
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 8.3e-25 119.4 77 70.1
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-23 112.8 143 41.3
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 1.0e-22 112.5 73 69.9
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.3e-22 112.1 72 75.0
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 3.3e-21 107.5 104 54.8
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.8e-20 104.4 99 52.5
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 1.0e-14 85.9 274 28.1
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-10 70.9 53 54.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 2.9e-09 67.8 87 47.1
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 8.4e-09 66.2 40 82.5
Actinidia18430 Actinidia chinensis HOM05D020173 ORTHO05D007020 1.9e-08 65.1 60 55.0
Actinidia18436 Actinidia chinensis HOM05D005650 ORTHO05D007020 7.1e-08 63.2 56 57.1
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 2.1e-07 61.6 137 32.1


User provided reference genes

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