Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 0.0e+00 1191.8 627 100.0
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 3.7e-245 851.7 637 70.8
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.1e-237 825.9 637 68.9
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.9e-233 812.8 651 68.8
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.0e-231 807.0 641 68.8
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 3.3e-230 802.0 650 67.2
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 7.2e-225 784.3 637 68.0
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 9.4e-225 783.9 629 68.7
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 6.1e-224 781.2 642 69.2
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 6.1e-224 781.2 640 66.7
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 9.7e-222 773.9 636 67.1
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.8e-220 769.6 651 65.4
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 2.4e-220 769.2 655 66.0
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 3.1e-220 768.8 634 66.1
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 1.2e-219 766.9 567 70.5
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 1.5e-219 766.5 640 66.4
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 6.5e-218 761.1 637 66.6
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 1.4e-217 760.0 642 66.5
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 2.5e-217 759.2 634 68.5
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 2.5e-217 759.2 633 68.1
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 3.2e-217 758.8 699 61.2
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 5.5e-217 758.1 650 64.3
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 9.4e-217 757.3 638 65.8
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 2.1e-216 756.1 633 67.1
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 3.6e-216 755.4 651 63.3
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.3e-214 748.8 636 64.5
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 3.3e-214 748.8 630 66.3
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 5.7e-214 748.0 555 70.3
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 8.2e-213 744.2 662 62.4
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 5.3e-212 741.5 638 65.0
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 7.0e-212 741.1 663 62.1
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 9.1e-212 740.7 631 64.2
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.2e-211 740.3 551 69.9
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.5e-211 740.0 627 66.3
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 2.0e-211 739.6 634 65.3
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.3e-210 736.9 636 64.3
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 1.7e-210 736.5 636 63.1
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 1.5e-209 733.4 644 63.0
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.6e-208 728.8 629 66.1
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 3.6e-208 728.8 650 62.9
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.5e-206 723.4 567 69.0
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 5.7e-206 721.5 656 62.2
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 9.7e-206 720.7 659 61.6
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 8.2e-205 717.6 643 65.9
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 5.9e-203 711.4 633 64.9
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 2.2e-202 709.5 641 60.5
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 3.2e-201 705.7 451 79.6
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 1.6e-200 703.4 630 62.9
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 2.1e-200 703.0 646 63.2
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 6.1e-200 701.4 641 64.3
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 2.0e-198 696.4 498 71.5
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.3e-197 691.0 602 65.6
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-196 690.3 638 60.5
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 8.5e-194 681.0 629 64.5
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 9.4e-193 677.6 619 62.5
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.1e-192 676.4 405 83.0
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 4.4e-190 668.7 648 60.2
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 2.2e-189 666.4 647 59.7
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 1.4e-188 663.7 400 82.0
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 2.7e-187 659.4 576 67.4
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 5.5e-185 651.7 643 57.5
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 9.5e-185 651.0 646 57.3
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 1.6e-184 650.2 644 56.7
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 1.4e-183 647.1 631 59.9
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 4.4e-182 642.1 650 57.2
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 7.5e-182 641.3 535 63.9
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 1.7e-181 640.2 655 56.6
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 4.9e-181 638.6 646 56.0
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 6.3e-181 638.3 656 56.7
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.8e-180 636.7 564 63.5
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 4.1e-180 635.6 637 56.4
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 2.0e-179 633.3 682 54.7
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.7e-179 632.9 565 65.1
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 9.5e-177 624.4 622 59.5
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 2.0e-174 616.7 664 56.0
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 2.4e-172 609.8 639 55.6
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 4.1e-172 609.0 422 72.7
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 9.2e-172 607.8 597 60.6
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 1.2e-168 597.4 619 56.7
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 2.6e-166 589.7 634 52.7
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 2.9e-165 586.3 432 67.4
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 1.9e-164 583.6 686 51.5
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 4.6e-163 578.9 477 64.6
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 7.3e-161 571.6 475 64.8
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 8.9e-159 564.7 636 51.9
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-158 563.9 640 53.4
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.8e-151 540.4 368 73.1
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 3.1e-151 539.7 469 62.3
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 1.9e-148 530.4 633 51.5
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 3.9e-146 522.7 492 59.6
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 9.6e-145 518.1 643 49.9
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 3.2e-140 503.1 546 53.5
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 3.2e-140 503.1 597 51.1
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 3.9e-138 496.1 646 48.8
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 3.9e-138 496.1 417 62.8
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 8.7e-138 495.0 401 64.1
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 4.5e-134 482.6 440 55.2
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 2.1e-128 463.8 294 78.9
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.5e-126 456.1 773 41.9
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 7.9e-123 445.3 431 52.9
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 1.0e-122 444.9 478 54.6
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.4e-119 434.5 358 64.5
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 1.9e-116 424.1 594 45.5
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.6e-115 421.0 428 56.3
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 7.4e-113 412.1 597 45.4
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 3.1e-111 406.8 570 50.5
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-110 404.4 546 47.4
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 4.5e-110 402.9 313 68.7
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 3.7e-96 356.7 419 52.5
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 7.0e-95 352.4 416 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 8.0e-91 339.0 343 52.5
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.3e-89 333.6 519 40.3
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.1e-87 326.6 644 39.3
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 5.3e-87 326.2 262 64.1
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.0e-85 322.0 197 81.7
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 1.7e-85 321.2 411 50.9
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 2.9e-85 320.5 422 48.8
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.6e-78 298.1 577 40.9
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.9e-76 291.2 341 54.5
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 9.4e-76 288.9 171 81.3
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.7e-72 276.9 166 81.3
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 3.5e-70 270.4 351 44.7
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 9.5e-68 262.3 164 78.0
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 4.9e-64 250.0 166 72.3
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 2.0e-62 244.6 188 68.1
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.9e-60 238.0 337 53.4
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 5.2e-58 229.9 180 61.7
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 9.2e-55 219.2 126 83.3
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 1.9e-52 211.5 124 80.6
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.6e-51 207.2 142 73.2
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-49 201.4 186 60.8
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 3.9e-45 187.2 145 66.2
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 8.6e-45 186.0 124 75.0
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 7.3e-44 183.0 388 32.0
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.8e-42 178.3 135 69.6
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.3e-42 177.9 178 59.0
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 1.2e-41 175.6 412 32.0
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 3.6e-35 154.1 134 60.4
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.1e-34 152.5 216 47.2
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 4.2e-31 140.6 87 78.2
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 1.2e-30 139.0 501 22.6
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 3.5e-30 137.5 239 36.8
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 3.5e-30 137.5 239 36.8
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 4.3e-28 130.6 129 58.9
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 2.4e-23 114.8 92 63.0
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 5.4e-23 113.6 69 78.3
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 4.6e-22 110.5 95 63.2
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-22 110.2 96 56.2
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-22 110.2 96 56.2
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-22 110.2 96 56.2
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-22 110.2 96 56.2
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 6.0e-22 110.2 280 34.3
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.0e-21 109.4 110 59.1
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 1.8e-21 108.6 69 71.0
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 8.7e-21 106.3 88 59.1
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-20 105.1 90 56.7
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 4.3e-20 104.0 218 39.9
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 8.1e-19 99.8 180 39.4
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.6e-17 94.7 54 81.5
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 3.2e-15 87.8 160 37.5
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.5e-15 87.0 163 42.3
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.5e-14 84.3 54 72.2
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 7.9e-14 83.2 151 37.7
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.9e-13 80.9 52 80.8
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 6.7e-13 80.1 54 68.5
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 1.8e-10 72.0 46 63.0
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 1.8e-10 72.0 46 63.0
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.1e-10 71.2 81 44.4
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 5.3e-10 70.5 46 60.9
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 1.2e-09 69.3 53 66.0
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 1.5e-09 68.9 40 82.5
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 7.6e-09 66.6 52 65.4
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 1.0e-08 66.2 36 83.3
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 2.2e-08 65.1 36 80.6
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 2.7e-06 58.2 52 59.6
arahy.Tifrunner.gnm1.ann1.35E9MG Arachis hypogaea HOM05D003836 ORTHO05D004556 3.5e-06 57.8 52 59.6
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 6.0e-06 57.0 53 56.6
arahy.Tifrunner.gnm1.ann1.WQ8HS1 Arachis hypogaea HOM05D001110 ORTHO05D082228 7.9e-06 56.6 33 72.7


User provided reference genes

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