Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.5e-209 732.6 370 100.0
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.6e-145 517.3 385 70.4
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.6e-145 517.3 385 70.4
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 4.8e-136 488.4 378 69.6
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 9.0e-135 484.2 379 69.7
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 5.5e-132 474.9 389 67.4
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 7.2e-132 474.6 379 67.3
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.2e-131 473.8 376 67.8
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.1e-131 473.0 375 67.5
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 3.6e-131 472.2 380 70.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 3.0e-130 469.2 384 66.1
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.9e-130 468.8 377 65.8
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.5e-129 466.8 378 66.9
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 7.4e-129 464.5 371 67.7
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 1.7e-128 463.4 384 67.2
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 1.8e-127 459.9 385 65.2
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 4.1e-127 458.8 385 65.2
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.2e-126 457.2 374 67.4
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.0e-126 456.4 366 66.9
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 2.0e-126 456.4 369 66.9
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 4.5e-126 455.3 380 63.7
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 4.5e-126 455.3 370 67.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 7.7e-126 454.5 362 67.1
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 8.5e-125 451.1 381 65.1
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 8.5e-125 451.1 380 65.0
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 3.2e-124 449.1 384 65.1
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 4.2e-124 448.7 362 65.7
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 7.2e-124 448.0 367 65.1
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 9.4e-124 447.6 328 69.8
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.2e-123 447.2 384 62.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 2.1e-123 446.4 280 78.9
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 2.7e-123 446.0 378 64.0
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 2.7e-123 446.0 364 65.7
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 4.7e-123 445.3 375 66.1
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 7.9e-123 444.5 379 63.3
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 7.9e-123 444.5 375 66.1
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 1.8e-122 443.4 380 63.9
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 6.3e-120 434.9 284 76.8
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 1.4e-119 433.7 366 64.2
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 3.1e-119 432.6 377 61.8
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 4.1e-119 432.2 265 81.5
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 5.3e-119 431.8 291 72.9
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 2.9e-117 426.0 292 76.0
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 2.9e-117 426.0 364 62.4
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 3.8e-117 425.6 398 60.6
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 5.0e-117 425.2 375 61.6
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 1.1e-116 424.1 377 61.0
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 1.1e-116 424.1 376 62.2
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.5e-116 423.7 265 78.1
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.5e-116 423.7 376 63.8
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.9e-116 423.3 365 63.8
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.9e-116 423.3 316 67.7
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 3.2e-116 422.5 334 67.1
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 4.2e-116 422.2 367 61.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.6e-115 420.2 260 80.0
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 3.6e-115 419.1 373 61.4
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 8.0e-115 417.9 327 65.1
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 3.9e-114 415.6 284 72.9
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.2e-114 415.2 370 61.1
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 8.8e-114 414.5 369 62.1
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 8.8e-114 414.5 280 73.6
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.1e-113 414.1 372 62.1
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 4.4e-113 412.1 365 59.7
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 9.7e-113 411.0 361 61.8
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 9.7e-113 411.0 385 59.7
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 2.8e-112 409.5 368 62.5
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.8e-111 406.8 301 67.4
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 7.0e-111 404.8 362 61.3
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 7.0e-111 404.8 280 71.8
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.6e-110 403.7 362 60.5
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.6e-110 403.7 327 64.2
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 3.5e-110 402.5 362 60.8
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.5e-110 402.1 374 61.0
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.0e-109 401.0 281 71.2
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.7e-109 400.2 362 61.3
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 2.2e-109 399.8 345 62.6
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 5.0e-109 398.7 281 71.5
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 2.5e-108 396.4 334 62.0
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 3.6e-107 392.5 371 59.8
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 6.1e-107 391.7 310 66.5
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 3.0e-106 389.4 384 57.6
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.5e-105 387.1 474 49.2
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.5e-105 387.1 269 71.0
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 5.7e-105 385.2 368 58.2
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 4.8e-104 382.1 353 59.5
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.5e-100 370.5 330 61.2
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 4.2e-100 369.0 283 66.4
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 2.4e-95 353.2 373 56.0
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 1.5e-89 334.0 297 57.2
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-86 324.3 294 60.5
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 8.6e-85 318.2 286 60.1
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 6.2e-83 312.0 376 50.3
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.5e-81 307.4 272 63.2
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.5e-81 307.4 275 62.5
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 5.8e-81 305.4 272 62.9
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 5.0e-77 292.4 247 58.7
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.1e-75 287.0 239 57.3
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 4.7e-75 285.8 248 58.5
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 5.4e-71 272.3 238 52.9
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.9e-68 263.8 385 44.9
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.4e-65 252.7 238 51.3
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 5.8e-65 252.3 240 51.2
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 1.1e-63 248.1 198 63.6
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.2e-57 228.0 186 63.4
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.5e-54 216.5 116 84.5
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 4.6e-54 216.1 221 53.4
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.9e-47 194.1 120 80.0
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 1.9e-47 194.1 238 42.9
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 3.2e-47 193.4 233 39.5
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 3.5e-46 189.9 153 55.6
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 9.9e-41 171.8 219 43.4
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 3.9e-37 159.8 232 47.4
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 7.4e-36 155.6 222 48.6
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 1.9e-31 141.0 137 60.6
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.7e-30 137.1 147 56.5
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 6.9e-26 122.5 132 56.8
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.6e-25 120.6 104 59.6
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 5.5e-23 112.8 75 77.3
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 1.4e-15 88.2 195 31.8
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 2.5e-15 87.4 67 71.6
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 2.7e-14 84.0 105 46.7
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 1.3e-08 65.1 142 30.3
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.2e-08 64.3 142 29.6
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 3.8e-08 63.5 133 30.8
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 5.0e-08 63.2 149 28.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 6.5e-08 62.8 142 29.6
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 8.5e-08 62.4 153 28.8
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.1e-07 62.0 142 29.6
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.4e-07 61.6 208 26.9
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 1.9e-07 61.2 141 31.9
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 2.5e-07 60.8 203 26.6
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 4.2e-07 60.1 142 28.9
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 5.5e-07 59.7 150 29.3
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 7.2e-07 59.3 148 29.7
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 7.2e-07 59.3 142 28.9
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 9.4e-07 58.9 177 24.9
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 9.4e-07 58.9 158 31.0
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.2e-06 58.5 141 30.5
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.6e-06 58.2 199 24.1
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.6e-06 58.2 175 26.3
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 3.6e-06 57.0 202 25.7
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 3.6e-06 57.0 142 25.4
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 4.7e-06 56.6 199 23.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 4.7e-06 56.6 199 23.6
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 4.7e-06 56.6 199 23.6
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 6.1e-06 56.2 142 29.6
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 6.1e-06 56.2 177 24.3
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 6.1e-06 56.2 143 30.8
FvH4_6g47571 Fragaria vesca HOM05D006539 ORTHO05D008694 7.9e-06 55.8 132 31.8
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 7.9e-06 55.8 218 23.9


User provided reference genes

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