Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1759.6 851 100.0
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1409.0 851 78.8
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1400.2 849 77.9
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1390.9 852 76.9
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1389.0 852 77.7
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1382.5 852 77.2
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1375.1 885 75.1
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1373.2 850 76.2
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1362.8 808 80.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1362.4 849 76.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1350.1 850 76.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1350.1 850 76.0
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1349.3 852 75.1
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1346.6 848 74.1
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1343.2 851 74.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1342.0 882 73.6
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1336.6 851 74.7
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1332.8 823 77.5
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1331.2 851 74.4
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1328.5 854 73.7
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1328.2 853 74.3
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1327.4 851 74.1
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1325.5 849 74.9
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1322.8 856 74.1
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1320.8 851 74.7
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1311.6 850 73.9
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1310.8 971 67.3
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1310.4 853 72.9
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1308.1 850 73.8
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1306.2 811 76.9
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1304.7 850 71.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1300.4 863 72.8
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1290.4 849 73.3
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1289.2 859 72.6
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1289.2 871 71.8
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1283.1 856 71.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1279.2 849 70.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1271.9 853 72.6
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1269.6 850 71.3
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1268.8 854 71.2
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1268.8 850 70.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1268.1 853 71.0
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1266.9 850 70.2
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1266.9 856 70.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1266.1 854 70.0
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1264.2 849 70.8
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1260.7 850 70.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1256.9 853 70.3
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1256.1 857 70.2
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1255.0 851 70.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1254.6 850 71.9
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1254.6 850 70.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1249.6 853 70.5
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1249.2 857 69.4
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1248.8 851 70.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1246.9 850 69.4
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 853 70.1
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 851 70.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1240.3 854 71.0
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1239.6 852 69.8
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1238.8 850 69.4
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1238.4 857 68.8
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1234.9 875 68.2
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1224.5 851 69.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1221.5 849 68.7
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1219.9 849 68.4
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1207.2 848 68.6
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1204.9 849 67.6
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1201.8 852 67.5
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1199.5 851 67.2
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1199.1 849 66.8
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1196.0 851 68.0
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1193.7 851 66.9
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 870 64.4
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1183.7 884 64.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1181.4 849 67.0
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1181.0 850 67.3
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1180.6 854 67.6
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 854 67.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1173.7 855 65.7
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 854 66.7
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1172.1 855 67.0
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1171.4 857 65.5
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 845 66.7
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1167.1 888 64.5
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 869 65.9
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1166.4 859 65.2
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1161.0 849 65.7
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1159.1 765 73.2
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1152.5 802 68.1
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1146.0 836 64.2
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1130.9 789 67.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 751 70.0
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 727 72.6
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 0.0e+00 1123.2 853 65.7
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 879 62.6
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 773 66.5
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1095.9 781 65.7
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 0.0e+00 1095.9 821 62.1
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 772 66.8
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 0.0e+00 1089.7 718 70.8
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 855 64.2
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 0.0e+00 1085.9 907 59.6
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1079.3 773 64.9
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1077.8 780 65.6
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 5.8e-312 1073.5 851 61.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.7e-311 1072.4 781 65.2
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.3e-311 1072.0 823 61.1
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 8.7e-311 1070.1 780 65.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 4.4e-310 1067.8 777 64.4
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 4.6e-307 1057.7 805 63.2
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.5e-305 1052.7 783 64.0
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.6e-304 1049.3 806 61.4
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 4.3e-297 1024.6 782 63.4
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 4.1e-292 1008.1 727 65.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.5e-289 998.8 856 59.0
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.4e-276 955.7 805 58.3
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.0e-275 951.0 650 70.6
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.2e-270 936.8 598 76.1
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 9.0e-263 910.6 861 53.3
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.0e-254 882.9 768 56.6
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-252 877.1 796 55.2
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 5.7e-249 864.8 823 51.2
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.2e-240 836.3 857 48.1
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.1e-231 807.4 627 62.2
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 2.2e-229 799.7 788 50.0
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.4e-223 780.4 666 59.6
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-219 766.9 775 51.9
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.0e-218 764.2 471 75.2
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.0e-211 738.0 433 76.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.6e-203 713.8 693 50.1
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.8e-199 700.3 434 73.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.5e-188 663.3 667 53.5
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.6e-187 660.6 477 66.9
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.0e-185 653.7 538 60.4
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 8.3e-184 648.3 428 69.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 6.2e-179 632.1 588 54.8
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 4.0e-170 602.8 863 38.9
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 3.3e-164 583.2 576 54.7
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.6e-161 573.5 777 43.9
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.9e-148 530.8 433 61.9
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.9e-143 514.2 406 63.1
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.0e-137 494.2 321 70.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.4e-130 470.7 271 79.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.8e-125 454.5 383 60.6
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.8e-123 446.4 408 58.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.2e-123 445.7 340 63.2
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 3.0e-117 427.2 399 57.9
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.5e-95 354.4 242 67.8
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.9e-88 330.9 824 30.8
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.3e-80 305.4 527 34.2
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.2e-75 288.1 202 67.3
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.9e-71 275.0 210 65.2
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.6e-60 236.5 167 65.3
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.0e-56 224.6 139 74.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 3.2e-50 204.5 100 89.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.1e-45 188.0 100 84.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.2e-43 181.8 193 49.2
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.9e-40 171.0 196 45.9
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.3e-32 146.0 82 78.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.9e-27 128.3 124 54.8
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.1e-26 126.3 86 66.3
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.5e-23 115.2 84 65.5
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.5e-23 115.2 69 73.9
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 5.7e-23 114.0 84 63.1
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.8e-21 109.0 96 60.4
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.9e-19 101.7 81 61.7
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.2e-17 96.3 61 73.8
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 9.7e-15 86.7 45 84.4
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.6e-14 85.9 40 90.0
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.8e-14 84.3 39 92.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 5.3e-13 80.9 59 66.1
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.2e-12 79.7 49 77.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.7e-11 75.9 95 45.3
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.9e-11 75.1 94 45.7
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 2.9e-11 75.1 69 59.4


User provided reference genes

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