Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.5e-32 141.0 68 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 2.7e-29 131.3 63 98.4
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 4.7e-29 130.6 63 96.8
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 4.7e-29 130.6 63 96.8
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 8.0e-29 129.8 63 96.8
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-28 129.4 63 96.8
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-28 129.4 63 96.8
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.0e-28 129.4 63 96.8
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.0e-28 129.4 63 96.8
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-28 129.0 63 96.8
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-28 129.0 63 96.8
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-28 129.0 63 96.8
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 1.4e-28 129.0 63 96.8
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.4e-28 129.0 63 96.8
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 2.3e-28 128.3 63 96.8
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.3e-28 128.3 63 95.2
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 8.8e-28 126.3 63 93.7
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 2.0e-27 125.2 63 95.2
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.0e-27 125.2 63 95.2
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 3.3e-27 124.4 63 93.7
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 3.3e-27 124.4 63 93.7
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-27 124.4 63 93.7
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 4.4e-27 124.0 63 93.7
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 4.4e-27 124.0 63 93.7
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.7e-27 123.6 63 93.7
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.7e-27 123.6 63 93.7
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.7e-27 123.6 63 93.7
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.7e-27 123.6 63 90.5
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.3e-26 122.5 62 95.2
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 1.3e-26 122.5 62 95.2
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.3e-26 122.5 62 95.2
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.7e-26 122.1 63 92.1
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.7e-26 122.1 63 92.1
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.8e-26 121.3 63 92.1
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.7e-26 120.9 63 92.1
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 6.3e-26 120.2 62 93.5
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.3e-26 120.2 63 88.9
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 8.2e-26 119.8 63 85.7
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.2e-26 119.8 63 88.9
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-25 119.4 62 90.3
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-25 119.4 62 90.3
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-25 119.4 62 90.3
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-25 119.4 62 90.3
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.4e-25 119.0 63 87.3
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-25 118.6 63 88.9
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.8e-25 118.6 62 90.3
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 5.3e-25 117.1 62 88.7
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 5.3e-25 117.1 62 90.3
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.0e-25 116.7 63 87.3
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 7.0e-25 116.7 63 88.9
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.0e-24 115.2 58 93.1
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.0e-24 115.2 63 85.7
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.3e-23 112.5 55 96.4
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 2.2e-23 111.7 63 85.7
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-23 110.9 62 85.5
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 5.0e-23 110.5 63 85.7
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.0e-23 110.5 63 88.9
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.5e-23 110.2 59 89.8
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.5e-22 109.0 63 84.1
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 1.9e-22 108.6 60 88.3
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 1.2e-21 105.9 55 89.1
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 2.7e-21 104.8 56 87.5
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.4e-20 102.4 63 81.0
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-20 102.4 62 83.9
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.8e-20 102.1 63 81.0
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 4.0e-20 100.9 62 75.8
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 4.4e-19 97.4 63 79.4
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 1.3e-18 95.9 56 82.1
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-18 95.9 49 91.8
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.3e-18 95.9 60 81.7
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 4.8e-18 94.0 50 86.0
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 6.3e-18 93.6 46 93.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 6.3e-18 93.6 48 87.5
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.4e-17 92.4 61 75.4
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 2.4e-17 91.7 44 97.7
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 4.1e-17 90.9 55 81.8
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 5.3e-17 90.5 48 85.4
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.7e-16 88.2 58 67.2
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-15 85.1 46 84.8
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 2.9e-15 84.7 63 71.4
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.9e-15 84.7 54 68.5
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 8.5e-15 83.2 41 95.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.2e-13 79.3 51 74.5
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 8.0e-13 76.6 38 92.1
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 8.0e-13 76.6 38 92.1
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 1.4e-12 75.9 44 81.8
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.3e-12 75.1 43 81.4
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.0e-12 74.7 63 61.9
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 6.8e-12 73.6 41 85.4
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.5e-11 72.4 32 100.0
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 1.5e-11 72.4 60 63.3
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 9.8e-11 69.7 35 94.3
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 9.8e-11 69.7 41 82.9
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.2e-10 68.6 30 100.0
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 2.8e-10 68.2 36 88.9
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.4e-09 63.9 44 70.5
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.4e-09 63.9 44 70.5
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.4e-09 63.9 44 70.5
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.0e-08 62.0 47 59.6
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 5.9e-08 60.5 61 45.9
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.3e-07 59.3 30 86.7
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 1.5e-06 55.8 39 59.0


User provided reference genes

Program Settings