Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 2.0e-70 268.9 127 100.0
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 2.2e-40 169.1 127 64.6
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 8.4e-40 167.2 127 59.8
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 8.4e-40 167.2 127 59.8
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.6e-38 162.9 127 62.2
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.9e-36 156.0 126 56.3
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 9.6e-36 153.7 127 55.1
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 3.7e-35 151.8 125 57.6
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 6.2e-35 151.0 127 52.8
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.4e-34 149.8 125 58.4
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 1.4e-34 149.8 125 58.4
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.5e-33 146.4 125 58.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.5e-33 146.4 125 54.4
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.6e-33 145.6 125 55.2
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 3.4e-33 145.2 127 49.6
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.3e-32 143.3 127 56.7
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.8e-32 141.7 123 56.1
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.9e-32 141.4 128 53.9
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 4.9e-32 141.4 125 55.2
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 8.4e-32 140.6 125 55.2
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 8.4e-32 140.6 125 52.8
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.1e-31 140.2 123 54.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.4e-31 139.8 125 52.8
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-31 139.8 127 55.1
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 3.2e-31 138.7 126 50.8
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 4.2e-31 138.3 127 55.9
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 4.2e-31 138.3 127 55.1
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 4.2e-31 138.3 125 52.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 4.2e-31 138.3 127 53.5
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 5.5e-31 137.9 125 55.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 5.5e-31 137.9 127 53.5
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 5.5e-31 137.9 125 52.0
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.5e-31 137.9 127 54.3
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 5.5e-31 137.9 127 54.3
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 5.5e-31 137.9 127 54.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 9.3e-31 137.1 125 52.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 2.1e-30 136.0 127 52.8
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 4.6e-30 134.8 127 54.3
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.8e-29 132.9 124 56.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.8e-29 132.9 127 51.2
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 1.8e-29 132.9 125 51.2
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 2.3e-29 132.5 122 52.5
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 3.0e-29 132.1 127 52.8
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 3.9e-29 131.7 126 53.2
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 5.1e-29 131.3 124 53.2
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 5.1e-29 131.3 126 52.4
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 5.1e-29 131.3 125 49.6
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.1e-28 130.2 127 48.0
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.1e-28 130.2 122 51.6
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 2.5e-28 129.0 127 51.2
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.3e-28 128.3 124 53.2
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 5.6e-28 127.9 125 52.0
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 7.4e-28 127.5 123 50.4
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 7.4e-28 127.5 125 49.6
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 9.6e-28 127.1 124 52.4
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 9.6e-28 127.1 124 52.4
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 9.6e-28 127.1 124 52.4
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 9.6e-28 127.1 124 52.4
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 9.6e-28 127.1 124 52.4
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.6e-28 127.1 124 53.2
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.3e-27 126.7 124 52.4
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.3e-27 126.7 124 52.4
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-27 126.7 125 50.4
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-27 126.7 124 51.6
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.6e-27 126.3 124 51.6
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.1e-27 125.9 124 52.4
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.8e-27 125.6 124 52.4
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.7e-27 125.2 124 52.4
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.8e-27 124.8 124 52.4
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.4e-26 123.2 125 48.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.4e-26 123.2 124 50.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.4e-26 123.2 124 50.0
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.4e-26 123.2 124 50.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 1.4e-26 123.2 125 47.2
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.8e-26 122.9 125 52.8
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 2.4e-26 122.5 125 47.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 3.1e-26 122.1 124 50.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.1e-26 122.1 125 48.8
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 3.1e-26 122.1 125 50.4
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 4.0e-26 121.7 124 49.2
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 4.0e-26 121.7 127 48.8
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 6.9e-26 120.9 124 48.4
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 9.0e-26 120.6 126 54.0
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 9.0e-26 120.6 129 47.3
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.5e-25 119.8 124 49.2
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.5e-25 119.8 124 50.8
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.0e-25 119.4 125 52.0
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.0e-25 119.4 125 52.0
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 2.0e-25 119.4 125 52.0
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 3.4e-25 118.6 122 47.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 1.7e-24 116.3 125 44.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.2e-24 115.9 122 46.7
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 2.9e-24 115.5 123 49.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 6.5e-24 114.4 122 45.9
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 6.5e-24 114.4 114 50.9
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.1e-23 113.6 125 47.2
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 3.2e-23 112.1 125 45.6
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 4.2e-23 111.7 126 46.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.2e-22 110.2 123 48.0
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 6.7e-21 104.4 92 55.4
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.1e-20 103.6 119 43.7
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.2e-19 99.4 96 52.1
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.8e-19 99.0 111 49.5
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 4.8e-19 98.2 156 35.3
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.1e-18 97.1 79 59.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 6.9e-18 94.4 126 41.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 2.2e-16 89.4 120 42.5
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.9e-16 89.0 64 60.9
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 3.8e-16 88.6 127 40.9
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 1.1e-15 87.0 104 43.3
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.5e-15 85.9 121 38.8
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.2e-15 85.1 53 66.0
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 9.4e-15 84.0 64 60.9
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 6.1e-14 81.3 61 60.7
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.1e-12 77.0 54 63.0
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.5e-12 76.6 74 45.9
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 4.3e-12 75.1 59 52.5
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.3e-11 73.6 122 33.6
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.2e-11 72.8 53 62.3
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 2.8e-11 72.4 67 47.8
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.1e-10 70.5 40 77.5
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 4.1e-10 68.6 87 40.2
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 5.3e-10 68.2 67 43.3
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.2e-09 67.0 87 40.2
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 5.9e-09 64.7 96 40.6
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 1.3e-08 63.5 88 38.6
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 1.3e-08 63.5 132 33.3
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.9e-08 62.4 86 39.5
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 4.2e-07 58.5 72 43.1
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 5.5e-07 58.2 56 46.4
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.2e-06 57.0 123 28.5
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 1.2e-06 57.0 72 43.1
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.1e-06 56.2 77 39.0
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 7.9e-06 54.3 114 28.9
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 7.9e-06 54.3 114 28.9
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 7.9e-06 54.3 114 28.9
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 7.9e-06 54.3 114 28.9
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 7.9e-06 54.3 114 28.9
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 7.9e-06 54.3 114 28.9
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 7.9e-06 54.3 114 28.9
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 7.9e-06 54.3 76 39.5
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 7.9e-06 54.3 76 39.5


User provided reference genes

Program Settings