Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 0.0e+00 1522.3 781 100.0
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 0.0e+00 1200.3 781 78.1
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 0.0e+00 1183.3 781 77.1
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 0.0e+00 1174.1 781 76.8
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 0.0e+00 1173.3 781 76.3
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 0.0e+00 1172.1 781 76.8
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 0.0e+00 1164.4 781 76.3
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 0.0e+00 1164.1 796 75.0
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 0.0e+00 1162.1 781 76.4
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 0.0e+00 1158.3 784 74.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 0.0e+00 1157.9 781 76.4
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 0.0e+00 1155.2 781 75.3
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 0.0e+00 1154.4 781 75.7
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 0.0e+00 1152.5 781 75.3
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 0.0e+00 1151.3 779 75.7
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 0.0e+00 1148.7 781 75.0
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 0.0e+00 1144.8 781 74.9
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 0.0e+00 1142.9 783 75.1
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 0.0e+00 1137.9 764 75.9
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 0.0e+00 1134.8 779 74.6
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 0.0e+00 1128.6 781 75.0
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 0.0e+00 1127.9 781 74.4
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 0.0e+00 1123.2 783 73.8
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 0.0e+00 1122.5 764 75.4
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1111.7 781 73.9
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 0.0e+00 1106.3 781 73.2
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 0.0e+00 1104.0 781 71.2
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 0.0e+00 1100.5 792 71.6
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1099.7 781 72.9
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 0.0e+00 1092.4 779 70.3
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 0.0e+00 1087.4 781 72.0
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 0.0e+00 1087.4 781 72.5
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 0.0e+00 1085.9 781 72.3
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 0.0e+00 1078.5 781 72.1
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 0.0e+00 1078.2 779 70.7
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 5.3e-312 1074.7 779 69.2
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.7e-311 1071.6 830 68.1
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.1e-310 1069.7 779 68.9
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.9e-308 1060.8 780 69.0
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 8.4e-308 1060.1 813 69.7
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.1e-307 1059.7 784 69.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.9e-307 1058.9 783 70.2
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 9.3e-307 1056.6 781 68.2
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 2.7e-306 1055.0 781 69.7
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 4.6e-306 1054.3 781 68.8
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 3.0e-305 1051.6 781 68.8
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 3.9e-305 1051.2 784 68.6
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 5.1e-305 1050.8 784 69.3
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 7.4e-304 1047.0 784 69.1
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 5.3e-302 1040.8 782 69.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 4.5e-301 1037.7 781 68.5
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 3.8e-300 1034.6 781 68.4
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 3.2e-299 1031.6 781 67.6
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 2.7e-298 1028.5 778 67.6
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 7.9e-298 1026.9 776 68.8
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.9e-296 1022.3 776 68.6
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 3.3e-296 1021.5 779 68.7
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 7.4e-296 1020.4 770 69.4
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 3.7e-295 1018.1 781 66.5
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 8.2e-295 1016.9 778 67.4
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 2.4e-294 1015.4 782 67.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.2e-293 1013.1 780 66.8
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.2e-293 1013.1 783 67.6
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.7e-292 1009.2 692 75.1
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 2.2e-292 1008.8 781 67.1
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 3.8e-292 1008.1 770 68.3
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 4.6e-290 1001.1 782 66.0
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 7.4e-288 993.8 780 66.8
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-285 986.5 780 66.5
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 2.9e-284 981.9 792 64.0
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.4e-283 979.5 780 65.0
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 1.9e-283 979.2 752 67.2
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 4.1e-278 961.4 785 64.1
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 7.0e-278 960.7 765 66.0
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.0e-276 956.8 782 64.5
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 7.2e-275 950.7 790 63.2
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 8.0e-274 947.2 789 62.5
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.3e-271 937.6 781 63.4
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.2e-269 933.3 780 63.7
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 5.0e-268 927.9 792 62.0
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 6.5e-268 927.5 780 62.4
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 5.5e-267 924.5 781 62.5
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.6e-266 922.9 780 61.9
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 8.0e-266 920.6 779 62.0
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 6.8e-265 917.5 781 62.2
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 8.8e-265 917.1 779 61.5
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 9.8e-264 913.7 780 61.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 9.1e-262 907.1 785 62.9
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 9.1e-262 907.1 785 62.9
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 9.1e-262 907.1 785 62.9
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 4.2e-259 898.3 784 62.1
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.8e-257 892.9 784 62.0
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 4.4e-256 888.3 615 76.4
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 7.5e-256 887.5 789 61.2
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 9.5e-243 844.0 785 58.5
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.5e-229 798.9 652 63.3
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.8e-229 797.7 652 63.3
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 7.6e-224 781.2 780 56.8
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.0e-212 742.7 637 62.5
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.4e-198 697.2 568 62.1
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.1e-197 693.3 446 80.0
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 4.3e-179 632.5 835 46.3
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.7e-175 620.5 457 70.7
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 8.8e-172 608.2 448 70.3
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.4e-169 600.9 451 68.7
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 5.3e-169 599.0 526 60.3
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 5.3e-169 599.0 446 70.9
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 6.9e-169 598.6 451 69.4
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 2.2e-167 593.6 451 68.1
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 5.0e-167 592.4 743 47.4
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 5.5e-166 589.0 441 69.8
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 2.3e-164 583.6 474 64.8
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 3.7e-162 576.2 446 67.5
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 3.7e-162 576.2 446 67.5
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.8e-156 557.4 447 66.2
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.1e-153 546.6 445 64.5
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 5.3e-153 545.8 446 66.1
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.5e-150 537.7 412 67.2
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.0e-148 531.6 445 63.6
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.2e-146 523.9 446 63.2
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.1e-145 519.6 440 63.2
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 7.0e-145 518.8 446 62.8
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 2.0e-144 517.3 708 45.6
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.7e-143 514.2 668 46.0
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 2.2e-143 513.8 446 61.4
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 5.4e-137 492.7 443 61.4
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.7e-135 487.6 450 60.4
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 5.2e-132 476.1 440 58.4
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.5e-131 474.6 440 58.6
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.0e-131 474.2 745 42.0
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 2.6e-131 473.8 736 40.9
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 4.1e-129 466.5 440 58.2
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 2.0e-128 464.2 442 58.4
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 4.6e-128 463.0 442 58.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 9.8e-123 445.3 444 56.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.7e-122 444.5 298 76.5
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 2.1e-117 427.6 449 54.8
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.7e-114 417.9 660 43.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 2.3e-103 380.9 312 63.1
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 5.1e-95 353.2 247 76.5
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.6e-93 348.2 445 45.6
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.9e-90 337.4 231 77.9
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.5e-78 298.5 189 81.5
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.2e-64 252.3 359 42.1
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.1e-60 239.2 360 43.9
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.4e-60 238.0 798 28.8
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 4.1e-60 237.3 146 80.1
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.1e-57 229.2 147 73.5
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.1e-55 220.3 133 83.5
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.1e-55 220.3 133 83.5
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 5.9e-51 206.8 140 73.6
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 4.7e-48 197.2 439 32.6
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.5e-43 180.6 155 60.0
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.8e-42 177.6 155 58.7
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.5e-30 139.0 90 71.1
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.3e-29 136.0 97 64.9
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.0e-20 103.6 87 67.8
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 5.9e-19 100.5 70 65.7
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 6.4e-13 80.5 54 70.4
MD08G1099400 Malus domestica HOM05D031194 ORTHO05D029699 1.3e-10 72.8 69 56.5


User provided reference genes

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