Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 3.8e-175 618.2 348 100.0
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 3.9e-87 325.9 347 65.4
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 3.5e-80 302.8 347 59.4
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 4.7e-77 292.4 349 61.3
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.1e-73 281.2 413 50.4
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 8.1e-69 265.0 343 51.6
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 4.0e-68 262.7 346 53.2
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.7e-66 257.3 372 45.7
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 2.4e-65 253.4 374 54.0
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.2e-65 253.1 363 51.8
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 4.6e-64 249.2 375 49.6
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 8.7e-63 245.0 375 48.3
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.9e-62 243.8 424 42.7
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 9.6e-62 241.5 373 46.4
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 4.0e-60 236.1 355 48.2
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.5e-59 234.2 373 49.6
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 3.4e-59 233.0 377 48.3
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 1.2e-56 224.6 362 42.3
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 6.0e-56 222.2 389 47.6
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.1e-54 218.0 373 50.9
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 2.5e-54 216.9 376 41.0
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 3.1e-52 209.9 377 47.5
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 4.0e-52 209.5 377 38.7
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.5e-51 207.6 375 45.1
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 7.6e-51 205.3 350 49.7
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.3e-50 204.5 338 48.5
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 4.9e-50 202.6 413 44.1
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.1e-49 201.4 350 41.7
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 4.6e-48 196.1 443 38.4
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.3e-47 194.5 376 39.9
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.3e-47 194.5 236 52.1
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.8e-47 194.1 366 41.0
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.3e-47 193.7 374 45.2
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 1.5e-46 191.0 362 45.6
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.4e-44 183.7 283 47.3
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 6.9e-44 182.2 347 40.3
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.0e-42 178.3 348 39.1
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.7e-42 177.6 351 37.6
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.9e-42 176.8 351 37.3
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.1e-41 174.9 373 38.1
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 3.2e-41 173.3 424 44.1
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 7.2e-41 172.2 347 37.8
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.2e-40 171.4 382 41.4
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.2e-40 171.4 349 37.5
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.6e-40 169.9 364 35.4
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.8e-39 167.5 370 37.3
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 1.5e-38 164.5 370 37.6
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.5e-38 164.5 397 37.5
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 4.3e-38 162.9 348 36.2
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 2.2e-37 160.6 361 42.4
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 2.8e-37 160.2 346 36.7
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 4.8e-37 159.5 356 39.0
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 1.8e-36 157.5 353 37.1
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 5.3e-36 156.0 414 41.1
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.5e-35 154.5 383 38.1
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.5e-35 154.5 400 35.8
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 4.5e-35 152.9 389 42.2
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.0e-34 151.8 385 41.6
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 2.2e-34 150.6 344 35.8
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.9e-34 150.2 391 40.9
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 6.5e-34 149.1 346 44.5
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 8.5e-34 148.7 399 39.3
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 2.5e-33 147.1 359 43.5
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 3.2e-33 146.7 387 38.8
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 4.2e-33 146.4 437 35.2
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 7.2e-33 145.6 343 39.9
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 7.2e-33 145.6 362 38.7
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 9.4e-33 145.2 429 32.6
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 7.9e-32 142.1 282 50.4
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.8e-31 141.0 378 34.9
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.3e-31 140.6 365 35.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 3.9e-31 139.8 383 33.9
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 9.7e-30 135.2 435 32.4
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 2.2e-29 134.0 363 35.0
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 1.1e-28 131.7 350 37.7
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.1e-28 131.7 358 36.9
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 1.4e-28 131.3 376 37.0
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.8e-28 131.0 372 37.9
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 4.1e-28 129.8 257 51.0
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 9.1e-28 128.6 377 33.2
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 1.5e-27 127.9 371 34.2
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.5e-27 127.9 362 34.3
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 2.0e-27 127.5 379 38.3
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 2.6e-27 127.1 369 34.1
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.6e-27 127.1 377 36.1
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.3e-26 124.8 443 30.0
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 1.7e-26 124.4 372 33.1
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 2.2e-26 124.0 362 31.5
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 8.5e-26 122.1 369 33.3
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 4.2e-25 119.8 377 33.7
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 5.5e-25 119.4 360 33.6
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 7.2e-25 119.0 434 32.7
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 9.4e-25 118.6 347 33.4
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 2.1e-24 117.5 359 38.2
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 3.6e-24 116.7 357 33.3
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 6.1e-24 115.9 361 31.0
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 2.3e-23 114.0 352 30.7
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 1.1e-22 111.7 362 40.6
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 4.4e-22 109.8 441 27.9
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 5.7e-22 109.4 352 30.1
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 9.7e-22 108.6 406 37.2
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 3.7e-21 106.7 352 33.2
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 3.7e-21 106.7 347 33.4
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 4.8e-21 106.3 407 31.9
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 1.1e-20 105.1 380 30.8
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 2.4e-20 104.0 312 33.3
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 2.0e-19 100.9 349 32.4
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 1.0e-18 98.6 398 31.7
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.0e-18 98.6 299 32.8
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.7e-18 97.8 211 37.9
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.5e-17 94.7 152 46.1
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 1.2e-16 91.7 91 56.0
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 1.2e-16 91.7 373 31.6
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 4.7e-16 89.7 355 31.8
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 6.3e-13 79.3 218 34.4
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 6.3e-13 79.3 175 36.6
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 8.2e-13 79.0 91 47.3
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 2.4e-12 77.4 178 36.5
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 2.4e-12 77.4 89 48.3
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 4.1e-12 76.6 178 36.5
AUR62014355 Chenopodium quinoa HOM05D034668 ORTHO05D006714 5.3e-12 76.3 300 35.3
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 5.9e-11 72.8 195 35.4
PSO144G0019 Papaver somniferum HOM05D006001 ORTHO05D006714 1.0e-10 72.0 72 48.6
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 1.7e-10 71.2 201 35.3
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 2.2e-10 70.9 353 31.4
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 6.5e-10 69.3 215 32.6
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 3.2e-09 67.0 82 51.2
vmacro17886 Vaccinium macrocarpon HOM05D006001 ORTHO05D006714 4.2e-09 66.6 61 60.7
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 2.1e-08 64.3 93 44.1
AUR62019098 Chenopodium quinoa HOM05D034668 ORTHO05D006714 1.0e-07 62.0 311 32.8
SEGI_29730 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.0e-07 62.0 104 37.5
CDE06G2035 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.2e-07 59.7 324 32.1
HanXRQChr15g0487561 Helianthus annuus HOM05D006001 ORTHO05D006714 1.5e-06 58.2 70 50.0
Pp3c22_17340 Physcomitrium patens HOM05D006001 ORTHO05D006714 2.0e-06 57.8 280 35.4
HanXRQChr13g0425001 Helianthus annuus HOM05D006001 ORTHO05D006714 3.4e-06 57.0 78 46.2
Os02g0510300 Oryza sativa ssp. japonica HOM05D034158 ORTHO05D037074 3.4e-06 57.0 236 29.7
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 4.4e-06 56.6 77 46.8
Zm00001eb089620 Zea mays HOM05D034158 ORTHO05D037074 4.4e-06 56.6 348 28.4


User provided reference genes

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