Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009172001 Vitis vinifera HOM05D001292 ORTHO05D001202 6.3e-188 660.6 332 100.0
CiPaw.08G055500 Carya illinoinensis HOM05D001292 ORTHO05D001202 2.5e-67 260.0 344 46.8
Actinidia19631 Actinidia chinensis HOM05D001292 ORTHO05D001202 3.6e-66 256.1 336 45.5
Cfa013791 Carpinus fangiana HOM05D001292 ORTHO05D001202 4.7e-66 255.8 342 43.6
CiPaw.07G165900 Carya illinoinensis HOM05D001292 ORTHO05D001202 8.0e-66 255.0 343 45.8
Haze_22451 Corylus avellana HOM05D001292 ORTHO05D001202 8.0e-66 255.0 339 45.1
Thecc.08G070600 Theobroma cacao HOM05D001292 ORTHO05D001202 3.7e-63 246.1 332 44.9
TAR625G0946 Trochodendron aralioides HOM05D001292 ORTHO05D001202 2.7e-61 240.0 344 43.9
QL09p017743 Quercus lobata HOM05D001292 ORTHO05D001202 5.9e-61 238.8 341 43.7
COL.COLO4_35242 Corchorus olitorius HOM05D001292 ORTHO05D001202 6.6e-60 235.3 329 44.4
Lj4A718G40 Lonicera japonica HOM05D001292 ORTHO05D001202 2.5e-59 233.4 349 43.3
Hma1.2p1_0125F.1_g058890 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 7.3e-59 231.9 330 42.4
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 2.8e-58 229.9 336 43.8
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 3.6e-58 229.6 340 44.7
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 6.1e-58 228.8 337 41.5
Lj4A737G51 Lonicera japonica HOM05D001292 ORTHO05D001202 2.3e-57 226.9 349 43.0
CSS0010703 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 2.2e-55 220.3 340 43.2
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 1.1e-54 218.0 342 40.9
Gohir.D01G117200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.5e-51 206.8 325 40.9
MD15G1385000 Malus domestica HOM05D001292 ORTHO05D001202 3.3e-51 206.5 335 40.3
Gorai.002G142500 Gossypium raimondii HOM05D001292 ORTHO05D001202 5.6e-51 205.7 325 40.6
MD08G1197400 Malus domestica HOM05D001292 ORTHO05D001202 3.6e-50 203.0 335 40.0
Gohir.A01G132400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.8e-49 200.7 326 40.2
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 5.8e-48 195.7 344 38.1
MELO3C011091.2 Cucumis melo HOM05D001292 ORTHO05D001202 3.0e-44 183.3 340 37.4
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 1.2e-42 177.9 346 36.4
LjContig00408g0003702 Lotus japonicus HOM05D001292 ORTHO05D001202 1.2e-42 177.9 288 36.8
Gorai.009G229600 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.4e-41 174.5 284 38.0
Gohir.A05G219700 Gossypium hirsutum HOM05D001292 ORTHO05D001202 8.9e-41 171.8 276 38.8
Nn5g29887 Nelumbo nucifera HOM05D001292 ORTHO05D001202 8.9e-41 171.8 343 35.9
Gohir.D05G222200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.2e-40 171.4 284 37.7
Ciclev10000201m.g Citrus clementina HOM05D001292 ORTHO05D001202 2.0e-40 170.6 329 34.7
Cpa.g.sc21.13 Carica papaya HOM05D001292 ORTHO05D001202 4.4e-40 169.5 349 36.4
CsaV3_2G030290 Cucumis sativus L. HOM05D001292 ORTHO05D001202 8.3e-39 165.2 334 35.9
Eucgr.F02147 Eucalyptus grandis HOM05D001292 ORTHO05D001202 1.1e-38 164.9 326 35.0
TWI56G0043 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 3.2e-38 163.3 330 37.0
Ca_16000_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 1.6e-37 161.0 336 36.0
Dinv15996 Davidia involucrata HOM05D001292 ORTHO05D001202 2.1e-37 160.6 336 35.1
RcHm_v2.0_Chr7g0236781 Rosa chinensis HOM05D001292 ORTHO05D001202 2.1e-37 160.6 270 39.3
Sabra02G0083000 Salix brachista HOM05D001292 ORTHO05D001202 2.7e-37 160.2 340 33.8
FAN04G0518 Fragaria x ananassa HOM05D001292 ORTHO05D001202 7.8e-37 158.7 402 32.3
TPR.G6330 Trifolium pratense HOM05D001292 ORTHO05D001202 7.8e-37 158.7 332 32.8
FAN13G3173 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.0e-36 158.3 395 32.9
FAN08G0616 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.3e-36 157.9 395 32.4
Glyma.06G095600 Glycine max HOM05D001292 ORTHO05D001202 3.0e-36 156.8 346 37.0
FAN18G2083 Fragaria x ananassa HOM05D001292 ORTHO05D001202 6.6e-36 155.6 395 32.2
Sed0011755 Sechium edule HOM05D001292 ORTHO05D001202 6.6e-36 155.6 326 37.1
FvH4_5g35390 Fragaria vesca HOM05D001292 ORTHO05D001202 1.5e-35 154.5 395 32.4
Sed0022127 Sechium edule HOM05D001292 ORTHO05D001202 2.5e-35 153.7 325 32.6
Psat5g046880 Pisum sativum HOM05D001292 ORTHO05D001202 1.2e-34 151.4 340 35.3
Lalb_Chr08g0242481 Lupinus albus HOM05D001292 ORTHO05D001202 4.7e-34 149.4 339 33.9
TWI12G0821 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 1.4e-33 147.9 319 36.1
Sc01g0001150 Simmondsia chinensis HOM05D001292 ORTHO05D001202 1.8e-33 147.5 343 29.7
vmacro04654 Vaccinium macrocarpon HOM05D001292 ORTHO05D001202 1.8e-33 147.5 314 35.7
Manes.02G145000 Manihot esculenta HOM05D001292 ORTHO05D001202 4.0e-33 146.4 327 35.2
Lj1g0015973 Lotus japonicus HOM05D001292 ORTHO05D001202 5.2e-33 146.0 177 44.6
arahy.Tifrunner.gnm1.ann1.72ZBT8 Arachis hypogaea HOM05D001292 ORTHO05D001202 1.2e-32 144.8 342 32.5
Medtr3g100390 Medicago truncatula HOM05D001292 ORTHO05D001202 2.0e-32 144.1 362 33.1
PGR031G1992 Punica granatum HOM05D001292 ORTHO05D001202 2.2e-31 140.6 337 30.6
TAR381G0500 Trochodendron aralioides HOM05D001292 ORTHO05D001202 2.2e-31 140.6 268 38.8
Aqoxy6G00877 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 4.9e-31 139.4 361 30.2
VMungo1309G1057 Vigna mungo HOM05D001292 ORTHO05D001202 2.4e-30 137.1 334 35.3
Aa31LG1G5260 Aethionema arabicum HOM05D001292 ORTHO05D001202 5.4e-30 136.0 340 29.1
CANSAT25G2063 Cannabis sativa HOM05D001292 ORTHO05D001202 9.2e-30 135.2 316 30.4
Potri.002G105700 Populus trichocarpa HOM05D001292 ORTHO05D001202 3.5e-29 133.3 329 31.9
Potri.005G155600 Populus trichocarpa HOM05D001292 ORTHO05D001202 4.6e-29 132.9 322 33.9
HanXRQChr05g0163371 Helianthus annuus HOM05D001292 ORTHO05D001202 1.0e-28 131.7 186 42.5
Lalb_Chr11g0065021 Lupinus albus HOM05D001292 ORTHO05D001202 1.0e-28 131.7 338 32.5
Glyma.02G214000 Glycine max HOM05D001292 ORTHO05D001202 2.3e-28 130.6 194 42.8
Duzib052G0393 Durio zibethinus HOM05D001292 ORTHO05D001202 3.9e-28 129.8 353 29.2
Hund27020 Selenicereus undatus HOM05D001292 ORTHO05D001202 5.1e-28 129.4 333 27.6
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 1.1e-27 128.3 336 29.5
Phvul.009G037600 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 2.5e-27 127.1 337 32.6
Migut.N02858 Erythranthe guttata HOM05D001292 ORTHO05D001202 2.1e-26 124.0 340 31.5
Prupe.6G149300 Prunus persica HOM05D001292 ORTHO05D001202 8.1e-26 122.1 119 51.3
Lsat_1_v5_gn_6_105041 Lactuca sativa HOM05D001292 ORTHO05D001202 1.1e-25 121.7 198 37.9
Potri.007G115400 Populus trichocarpa HOM05D001292 ORTHO05D001202 1.4e-25 121.3 330 30.3
HanXRQChr15g0484871 Helianthus annuus HOM05D001292 ORTHO05D001202 1.8e-25 120.9 346 30.9
THA.LOC104816798 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 2.4e-25 120.6 324 27.2
Thhalv10006645m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 3.1e-25 120.2 353 29.2
Manes.07G038300 Manihot esculenta HOM05D001292 ORTHO05D001202 9.0e-25 118.6 345 29.9
arahy.Tifrunner.gnm1.ann1.6V6D2H Arachis hypogaea HOM05D001292 ORTHO05D001202 1.2e-24 118.2 157 42.0
Duzib248G0868 Durio zibethinus HOM05D001292 ORTHO05D001202 2.0e-24 117.5 347 28.8
BraA08t35351Z Brassica rapa HOM05D001292 ORTHO05D001202 9.9e-24 115.2 349 28.1
Sp1g08320 Schrenkiella parvula HOM05D001292 ORTHO05D001202 9.9e-24 115.2 187 34.8
C05p07810 Brassica napus HOM05D001292 ORTHO05D001202 1.3e-23 114.8 337 28.5
MBI07_g34624_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 1.3e-23 114.8 365 30.4
AL1G20280 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 2.2e-23 114.0 187 35.3
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 2.2e-23 114.0 331 28.7
BolC5t29532H Brassica oleracea HOM05D001292 ORTHO05D001202 8.4e-23 112.1 339 28.3
Ah.05g170840 Amaranthus hybridus HOM05D001292 ORTHO05D001202 1.1e-22 111.7 334 28.4
Glyma.04G093800 Glycine max HOM05D001292 ORTHO05D001202 1.1e-22 111.7 343 31.5
THA.LOC104820191 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 1.1e-22 111.7 324 26.2
A08p34390 Brassica napus HOM05D001292 ORTHO05D001202 1.4e-22 111.3 187 35.3
Gorai.012G143900 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.4e-22 111.3 352 26.1
CARHR009700 Cardamine hirsuta HOM05D001292 ORTHO05D001202 1.9e-22 110.9 182 34.6
Gohir.D04G156900 Gossypium hirsutum HOM05D001292 ORTHO05D001202 3.2e-22 110.2 352 26.1
Lsat_1_v5_gn_9_75061 Lactuca sativa HOM05D001292 ORTHO05D001202 4.2e-22 109.8 350 28.3
MSTRG.24428 Avicennia marina HOM05D001292 ORTHO05D001202 5.4e-22 109.4 275 31.3
EL10Ac1g01055 Beta vulgaris HOM05D001292 ORTHO05D001202 5.4e-22 109.4 310 29.4
A06p06410 Brassica napus HOM05D001292 ORTHO05D001202 5.4e-22 109.4 353 28.6
MBI16_g27584_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 7.1e-22 109.0 363 27.3
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 7.1e-22 109.0 270 31.9
Sabra07G0094200 Salix brachista HOM05D001292 ORTHO05D001202 7.1e-22 109.0 337 29.4
Gohir.A04G115400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 9.3e-22 108.6 353 26.1
Nitab4.5_0000159g0110 Nicotiana tabacum HOM05D001292 ORTHO05D001202 9.3e-22 108.6 328 29.0
AT1G09730 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 1.2e-21 108.2 367 25.6
Actinidia01160 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.6e-21 107.8 327 28.7
C08p13140 Brassica napus HOM05D001292 ORTHO05D001202 1.6e-21 107.8 374 26.2
BolC8t48942H Brassica oleracea HOM05D001292 ORTHO05D001202 1.6e-21 107.8 374 26.2
Gohir.A03G177400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.6e-21 107.8 341 28.7
PSO210G3238 Papaver somniferum HOM05D001292 ORTHO05D001202 1.6e-21 107.8 183 32.8
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 1.6e-21 107.8 184 32.6
PSO170G5589 Papaver somniferum HOM05D001292 ORTHO05D001202 2.1e-21 107.5 173 34.1
BcaNung06984 Brassica carinata HOM05D001292 ORTHO05D001202 3.5e-21 106.7 178 34.8
BraA06t23852Z Brassica rapa HOM05D001292 ORTHO05D001202 3.5e-21 106.7 353 27.5
Sp7g31340 Schrenkiella parvula HOM05D001292 ORTHO05D001202 4.6e-21 106.3 319 26.0
Hund16858 Selenicereus undatus HOM05D001292 ORTHO05D001202 4.6e-21 106.3 330 26.1
AL7G17890 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 6.0e-21 105.9 190 33.2
Gohir.D02G201100 Gossypium hirsutum HOM05D001292 ORTHO05D001202 6.0e-21 105.9 125 41.6
CARHR241710 Cardamine hirsuta HOM05D001292 ORTHO05D001202 7.8e-21 105.5 172 34.3
PSO541G4975 Papaver somniferum HOM05D001292 ORTHO05D001202 1.0e-20 105.1 370 27.3
Glyma.13G256800 Glycine max HOM05D001292 ORTHO05D001202 1.3e-20 104.8 339 26.8
Gorai.005G225700 Gossypium raimondii HOM05D001292 ORTHO05D001202 1.3e-20 104.8 343 28.6
Lsat_1_v5_gn_4_183321 Lactuca sativa HOM05D001292 ORTHO05D001202 1.3e-20 104.8 164 39.6
Ca_00162_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 1.7e-20 104.4 330 29.1
ECA246G3273 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.7e-20 104.4 122 45.1
Manes.18G059001 Manihot esculenta HOM05D001292 ORTHO05D001202 1.7e-20 104.4 334 31.4
DCAR_012858 Daucus carota HOM05D001292 ORTHO05D001202 3.0e-20 103.6 279 31.5
TPR.G9503 Trifolium pratense HOM05D001292 ORTHO05D001202 3.9e-20 103.2 347 28.5
PSO675G2554 Papaver somniferum HOM05D001292 ORTHO05D001202 6.6e-20 102.4 374 26.2
Carub.0007s0682 Capsella rubella HOM05D001292 ORTHO05D001202 8.7e-20 102.1 190 32.1
A01p04700 Brassica napus HOM05D001292 ORTHO05D001202 1.1e-19 101.7 199 28.6
BraA01t00453Z Brassica rapa HOM05D001292 ORTHO05D001202 1.1e-19 101.7 199 28.6
Sabra17G0029900 Salix brachista HOM05D001292 ORTHO05D001202 1.1e-19 101.7 276 30.4
BcaC09g52173 Brassica carinata HOM05D001292 ORTHO05D001202 2.5e-19 100.5 317 27.4
C01p05090 Brassica napus HOM05D001292 ORTHO05D001202 2.5e-19 100.5 317 27.4
BolC1t00491H Brassica oleracea HOM05D001292 ORTHO05D001202 2.5e-19 100.5 317 27.4
Thhalv10024447m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 2.5e-19 100.5 167 33.5
AT4G33620 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 7.3e-19 99.0 186 31.2
arahy.Tifrunner.gnm1.ann1.Y95VYD Arachis hypogaea HOM05D001292 ORTHO05D001202 7.3e-19 99.0 336 27.4
Carub.0001s0907 Capsella rubella HOM05D001292 ORTHO05D001202 9.6e-19 98.6 183 31.7
Phvul.006G202100 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 9.6e-19 98.6 336 27.1
Solyc11g017040.2 Solanum lycopersicum HOM05D001292 ORTHO05D001202 1.3e-18 98.2 323 29.1
arahy.Tifrunner.gnm1.ann1.31UHS4 Arachis hypogaea HOM05D001292 ORTHO05D001202 2.1e-18 97.4 339 28.0
THA.LOC104807180 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 4.8e-18 96.3 334 28.1
ClCG09G016070 Citrullus lanatus HOM05D001292 ORTHO05D001202 6.2e-18 95.9 324 26.9
Sopen01g048280 Solanum pennellii HOM05D001292 ORTHO05D001202 6.2e-18 95.9 318 28.3
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 1.1e-17 95.1 347 26.5
Sopen11g009030 Solanum pennellii HOM05D001292 ORTHO05D001202 1.4e-17 94.7 325 29.2
Lsat_1_v5_gn_3_95181 Lactuca sativa HOM05D001292 ORTHO05D001202 2.4e-17 94.0 141 40.4
Atru.chr6.1255 Acer truncatum HOM05D001292 ORTHO05D001202 3.1e-17 93.6 92 48.9
CsaV3_7G006900 Cucumis sativus L. HOM05D001292 ORTHO05D001202 4.0e-17 93.2 321 24.9
CANSAT54G0160 Cannabis sativa HOM05D001292 ORTHO05D001202 9.0e-17 92.0 160 33.1
COL.COLO4_32386 Corchorus olitorius HOM05D001292 ORTHO05D001202 1.5e-16 91.3 419 23.6
Lj6g0027662 Lotus japonicus HOM05D001292 ORTHO05D001202 1.5e-16 91.3 337 27.3
Cc00_g07670 Coffea canephora HOM05D001292 ORTHO05D001202 2.0e-16 90.9 226 30.1
CAN.G61.18 Capsicum annuum HOM05D001292 ORTHO05D001202 2.6e-16 90.5 328 27.7
Peaxi162Scf00495g00217 Petunia axillaris HOM05D026203 ORTHO05D030438 3.4e-16 90.1 298 28.2
VMungo0540G0648 Vigna mungo HOM05D001292 ORTHO05D001202 3.4e-16 90.1 334 26.0
CAN.G523.11 Capsicum annuum HOM05D001292 ORTHO05D001202 9.9e-16 88.6 327 26.3
MELO3C018604.2 Cucumis melo HOM05D001292 ORTHO05D001202 3.8e-15 86.7 332 24.7
Nitab4.5_0000531g0050 Nicotiana tabacum HOM05D001292 ORTHO05D001202 1.1e-14 85.1 324 26.2
Lj5A230G43 Lonicera japonica HOM05D001292 ORTHO05D001202 9.3e-14 82.0 234 26.9
Cc02_g20940 Coffea canephora HOM05D001292 ORTHO05D001202 2.1e-13 80.9 326 27.6
Psat1g215560 Pisum sativum HOM05D001292 ORTHO05D001202 3.5e-13 80.1 366 23.8
CDE02G3610 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 1.0e-12 78.6 178 33.7
Lsat_1_v5_gn_2_62680 Lactuca sativa HOM05D001292 ORTHO05D001202 1.1e-11 75.1 125 40.0
CSS0039925 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 1.9e-11 74.3 74 45.9
CSS0046510 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 1.9e-11 74.3 74 45.9
Atru.chr13.1015 Acer truncatum HOM05D001292 ORTHO05D001202 9.6e-11 72.0 126 33.3
CDE01G0387 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 9.6e-11 72.0 178 32.6
Medtr2g009580 Medicago truncatula HOM05D001292 ORTHO05D001202 1.3e-10 71.6 388 22.2
Migut.B00556 Erythranthe guttata HOM05D001292 ORTHO05D001202 1.6e-10 71.2 168 29.8
Nitab4.5_0000706g0010 Nicotiana tabacum HOM05D001292 ORTHO05D001202 8.1e-10 68.9 122 32.8
AUR62027884 Chenopodium quinoa HOM05D001292 ORTHO05D001202 5.3e-09 66.2 90 35.6
TWI59G0076 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 6.9e-09 65.9 325 26.2
Lsat_1_v5_gn_5_140921 Lactuca sativa HOM05D000200 ORTHO05D000262 1.7e-07 61.2 79 40.5
Cpa.g.sc42.5 Carica papaya HOM05D001292 ORTHO05D001202 2.2e-07 60.8 64 40.6
Atru.chr13.1016 Acer truncatum HOM05D001292 ORTHO05D001202 1.1e-06 58.5 101 34.7
TAR381G1516 Trochodendron aralioides HOM05D001292 ORTHO05D001202 1.1e-06 58.5 39 69.2
HanXRQChr10g0289961 Helianthus annuus HOM05D001292 ORTHO05D001202 5.5e-06 56.2 180 28.9
SGA_v2.0_scaffold48G17832 Striga asiatica HOM05D001292 ORTHO05D001202 7.1e-06 55.8 174 26.4


User provided reference genes

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