Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 0.0e+00 1097.4 524 100.0
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 4.3e-255 884.4 502 83.1
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 8.0e-254 880.2 517 80.9
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 7.5e-252 873.6 526 80.0
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.1e-250 869.8 535 78.7
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 9.2e-250 866.7 466 86.7
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 3.5e-249 864.8 532 78.0
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 3.0e-248 861.7 533 77.9
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 9.5e-247 856.7 502 80.3
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 9.5e-247 856.7 471 84.1
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.2e-246 856.3 461 87.9
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.0e-245 853.2 502 79.9
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.0e-245 853.2 530 77.7
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.8e-245 852.4 521 79.1
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.5e-244 849.4 468 84.0
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.8e-244 847.4 501 79.6
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 9.8e-244 846.7 476 83.4
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.2e-243 845.5 463 84.7
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.9e-243 845.1 550 75.3
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 2.9e-243 845.1 510 79.6
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 8.3e-243 843.6 539 76.1
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 9.2e-242 840.1 470 83.2
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 9.2e-242 840.1 470 83.2
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.6e-241 839.3 523 76.1
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.6e-241 839.3 500 80.0
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 2.0e-241 839.0 500 77.6
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 2.7e-241 838.6 471 84.1
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 2.7e-241 838.6 499 79.4
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.5e-241 838.2 471 84.1
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 7.8e-241 837.0 489 81.2
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.0e-240 836.6 471 83.9
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.3e-240 836.3 476 83.0
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 3.9e-240 834.7 613 69.7
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 6.6e-240 833.9 500 79.6
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 6.6e-240 833.9 500 77.2
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 8.6e-240 833.6 526 77.2
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.9e-239 832.4 471 83.4
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 5.6e-239 830.9 471 83.2
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 9.5e-239 830.1 458 84.9
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 2.3e-237 825.5 510 76.9
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.0e-237 824.7 476 81.9
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 8.9e-237 823.5 461 82.6
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 4.4e-236 821.2 608 66.9
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 4.9e-235 817.8 526 75.7
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 4.9e-235 817.8 464 81.0
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.4e-234 816.2 476 80.9
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 4.1e-234 814.7 463 82.5
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 4.1e-234 814.7 492 77.4
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.2e-233 813.1 533 73.9
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 2.7e-233 812.0 462 80.5
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 7.8e-233 810.4 492 78.3
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 2.3e-232 808.9 463 80.6
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 3.9e-232 808.1 492 77.8
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 6.6e-232 807.4 463 80.6
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 1.5e-231 806.2 508 75.8
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.5e-231 806.2 469 81.0
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 3.3e-231 805.1 487 76.8
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 5.6e-231 804.3 500 76.8
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 9.5e-231 803.5 540 71.1
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.1e-229 800.0 469 79.3
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.8e-229 799.3 523 73.0
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.1e-229 798.5 469 79.3
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.1e-229 798.5 502 75.7
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 4.0e-229 798.1 528 72.9
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 5.2e-229 797.7 460 80.9
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 6.8e-229 797.3 463 79.3
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 6.8e-229 797.3 504 75.2
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.6e-228 793.9 537 71.5
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.2e-227 792.3 457 82.9
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 2.9e-227 792.0 513 73.5
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 5.4e-226 787.7 518 72.4
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 9.2e-226 786.9 520 71.7
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 1.2e-225 786.6 509 74.5
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.2e-225 786.6 502 75.5
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 6.0e-225 784.3 498 76.5
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 3.0e-224 781.9 459 78.9
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 3.0e-224 781.9 485 75.3
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 8.6e-224 780.4 535 70.1
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 8.6e-224 780.4 466 76.8
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.1e-223 780.0 491 74.1
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 3.3e-223 778.5 461 79.6
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 2.1e-222 775.8 476 75.6
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.4e-221 773.1 459 77.8
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 2.4e-221 772.3 513 72.3
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 6.9e-221 770.8 519 72.1
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 1.3e-219 766.5 491 74.3
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.7e-219 766.1 490 74.1
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.7e-219 766.1 476 75.0
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 8.4e-219 763.8 443 80.1
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 1.4e-218 763.1 599 64.3
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 3.2e-218 761.9 542 68.3
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 7.1e-218 760.8 491 73.7
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.2e-217 760.0 491 73.7
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 1.0e-216 756.9 478 74.5
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 5.1e-216 754.6 462 77.3
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.5e-215 753.1 436 79.1
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 5.8e-212 741.1 421 80.5
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 4.2e-210 734.9 421 80.0
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.9e-207 726.1 519 69.9
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 1.3e-206 723.4 459 77.6
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.8e-206 722.2 463 72.8
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.1e-205 718.8 476 71.8
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.2e-204 716.8 463 72.4
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 7.1e-202 707.6 458 71.6
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 5.6e-199 698.0 439 74.9
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.9e-194 682.9 421 76.2
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 2.3e-192 676.0 462 67.5
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 3.7e-190 668.7 461 66.8
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 4.5e-188 661.8 462 67.7
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 5.0e-187 658.3 460 67.6
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.6e-185 651.7 460 67.2
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 3.7e-182 642.1 459 68.0
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 4.1e-181 638.6 489 60.5
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 5.3e-181 638.3 451 65.4
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.2e-179 632.9 363 82.9
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 8.5e-179 630.9 470 67.0
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.1e-178 630.6 457 65.9
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.6e-177 626.7 460 66.1
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.8e-174 615.1 456 64.5
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.0e-168 597.4 482 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 7.7e-156 554.7 474 57.0
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 5.0e-147 525.4 350 73.1
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.1e-145 518.5 373 69.2
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.1e-128 463.0 421 54.6
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.2e-126 456.8 316 70.3
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 5.4e-125 452.2 255 81.2
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 2.7e-124 449.9 504 48.6
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 2.0e-119 433.7 269 75.5
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.1e-109 401.4 261 72.8
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.3e-102 377.9 326 61.7
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 4.2e-93 346.3 197 81.2
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 9.6e-90 335.1 255 61.2
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 2.4e-88 330.5 214 67.8
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.2e-79 301.6 242 59.9
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.1e-72 278.5 178 78.1
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 4.4e-58 229.9 144 75.0
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 3.4e-55 220.3 162 62.3
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.9e-47 193.0 113 77.0
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 2.9e-46 190.7 178 59.0
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 6.5e-46 189.5 157 62.4
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 7.5e-42 176.0 101 84.2
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.3e-38 165.2 115 70.4
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.8e-38 163.7 91 78.0
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.6e-36 157.1 152 55.3
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 1.5e-21 108.6 113 55.8
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 6.6e-14 83.2 57 59.6
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 8.6e-14 82.8 49 87.8
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 8.6e-14 82.8 49 87.8
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 2.5e-13 81.3 57 66.7
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 5.6e-13 80.1 58 74.1
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 1.8e-11 75.1 65 66.2
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 4.4e-10 70.5 104 43.3
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 1.4e-08 65.5 68 55.9


User provided reference genes

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