Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.9e-127 459.1 231 100.0
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 8.9e-48 194.5 307 41.0
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.0e-47 193.4 307 40.1
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.9e-46 188.7 307 39.7
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.9e-46 188.7 307 39.7
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 9.2e-45 184.5 307 37.1
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 2.7e-44 183.0 307 37.1
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 7.8e-44 181.4 271 39.5
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 2.3e-43 179.9 307 36.5
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.0e-43 179.5 307 38.1
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.6e-43 178.3 307 36.8
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.6e-43 178.3 307 38.1
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.3e-42 174.9 309 36.6
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 7.3e-42 174.9 307 36.2
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 9.6e-42 174.5 307 37.1
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.6e-41 173.7 307 35.5
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.6e-41 173.7 307 35.5
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.4e-40 170.6 307 37.8
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.1e-40 169.5 309 36.6
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.0e-40 169.1 302 36.1
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 9.0e-40 167.9 309 35.6
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 1.5e-39 167.2 309 35.9
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.0e-39 166.8 306 36.9
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 7.6e-39 164.9 302 34.8
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.0e-36 155.2 306 34.3
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 7.8e-36 154.8 339 31.9
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 5.1e-35 152.1 309 34.0
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 3.3e-34 149.4 304 31.9
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 4.3e-34 149.1 305 31.8
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 4.3e-34 149.1 310 33.9
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 4.0e-32 142.5 306 33.7
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.0e-32 142.5 307 31.6
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 9.0e-32 141.4 307 33.2
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 2.0e-31 140.2 307 32.2
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 2.2e-30 136.7 309 30.7
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 3.8e-30 136.0 315 31.4
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 8.4e-30 134.8 309 32.7
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 8.4e-30 134.8 309 32.7
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.1e-29 134.4 305 29.2
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 2.4e-29 133.3 308 31.8
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 3.2e-29 132.9 303 31.4
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 7.1e-29 131.7 303 31.0
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 7.1e-29 131.7 272 33.1
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.7e-28 129.8 85 69.4
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.7e-28 129.8 308 30.5
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.7e-28 129.8 302 30.1
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.5e-28 129.4 303 30.0
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.5e-28 129.4 302 32.1
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.0e-27 126.3 305 28.2
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 8.7e-27 124.8 262 32.8
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 3.3e-26 122.9 307 30.0
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.3e-26 122.5 298 29.2
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.3e-26 122.5 86 64.0
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 4.3e-26 122.5 85 65.9
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 4.3e-26 122.5 289 31.1
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 7.4e-26 121.7 85 62.4
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.3e-25 120.9 85 61.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.3e-25 120.9 85 61.2
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 2.1e-25 120.2 307 28.7
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.7e-25 119.4 85 61.2
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.2e-25 118.6 289 30.8
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 8.1e-25 118.2 85 63.5
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 8.1e-25 118.2 289 30.8
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 8.1e-25 118.2 83 62.7
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-24 117.9 88 63.6
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.4e-24 117.5 305 27.5
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.4e-24 117.5 289 30.4
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.8e-24 117.1 86 61.6
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 1.8e-24 117.1 86 64.0
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 2.4e-24 116.7 302 28.5
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.4e-24 116.7 87 60.9
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 3.1e-24 116.3 88 62.5
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 4.0e-24 115.9 85 62.4
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.3e-24 115.5 86 61.6
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 5.3e-24 115.5 83 62.7
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 6.9e-24 115.2 86 61.6
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 9.0e-24 114.8 336 26.5
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.5e-23 114.0 88 61.4
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 1.5e-23 114.0 83 60.2
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 2.6e-23 113.2 85 63.5
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 3.4e-23 112.8 291 29.9
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 3.4e-23 112.8 87 57.5
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 3.4e-23 112.8 303 28.1
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 7.6e-23 111.7 83 61.4
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 9.9e-23 111.3 83 60.2
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 1.7e-22 110.5 264 30.3
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 2.2e-22 110.2 301 27.6
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.9e-22 109.8 88 60.2
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.9e-22 109.8 88 60.2
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 2.9e-22 109.8 88 60.2
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 6.4e-22 108.6 305 28.5
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.2e-21 105.9 86 58.1
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 4.2e-21 105.9 85 54.1
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.2e-21 105.9 198 39.9
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 5.5e-21 105.5 88 60.2
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 7.1e-21 105.1 248 29.0
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 9.3e-21 104.8 267 29.6
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 2.1e-20 103.6 88 60.2
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.1e-20 103.6 88 60.2
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 2.1e-20 103.6 77 57.1
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.1e-20 103.6 86 60.5
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 6.0e-20 102.1 88 58.0
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 1.0e-19 101.3 88 59.1
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.3e-19 100.9 86 59.3
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.3e-19 100.9 85 55.3
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 3.0e-19 99.8 85 57.6
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 3.0e-19 99.8 87 59.8
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.0e-19 99.8 87 59.8
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.0e-19 99.8 87 59.8
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 3.9e-19 99.4 87 59.8
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.9e-19 99.4 80 57.5
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 5.1e-19 99.0 300 25.3
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 6.7e-19 98.6 80 57.5
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 8.7e-19 98.2 85 54.1
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.1e-18 97.8 305 26.6
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.9e-18 97.1 88 56.8
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.9e-18 97.1 85 52.9
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 2.5e-18 96.7 84 57.1
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 5.6e-18 95.5 285 24.9
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 5.6e-18 95.5 285 24.9
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 5.6e-18 95.5 285 24.9
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 7.4e-18 95.1 82 53.7
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 7.4e-18 95.1 286 23.8
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.6e-18 94.7 80 55.0
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.3e-17 94.4 92 55.4
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.6e-17 94.0 308 27.6
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.6e-17 94.0 110 41.8
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.6e-17 94.0 285 24.6
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.1e-17 93.6 88 48.9
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 2.1e-17 93.6 102 50.0
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 2.8e-17 93.2 80 56.2
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.8e-17 93.2 80 52.5
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.7e-17 92.8 82 54.9
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 8.2e-17 91.7 274 29.2
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.4e-16 90.1 88 54.5
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 3.1e-16 89.7 81 51.9
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.3e-16 89.0 130 41.5
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 4.5e-15 85.9 106 42.5
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 7.6e-15 85.1 142 38.7
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.0e-14 84.7 86 46.5
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.3e-14 84.3 72 56.9
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.1e-13 81.3 86 45.3
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.1e-13 81.3 86 45.3
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.4e-13 80.9 156 33.3
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.9e-13 80.5 71 50.7
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.5e-13 79.0 107 37.4
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 9.3e-13 78.2 72 41.7
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-12 77.8 88 51.1
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 2.1e-12 77.0 84 47.6
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 3.5e-12 76.3 74 54.1
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 7.9e-12 75.1 86 48.8
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 3.9e-11 72.8 91 38.5
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.9e-11 72.8 107 35.5
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 6.7e-11 72.0 225 28.4
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.1e-10 71.2 73 45.2
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 5.7e-10 68.9 95 41.1
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.3e-09 67.8 63 44.4
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.6e-09 67.4 75 41.3
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.2e-09 67.0 64 54.7
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.2e-09 67.0 92 41.3
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.1e-08 64.7 91 41.8
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 5.3e-08 62.4 63 52.4
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 7.7e-07 58.5 38 65.8
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 8.5e-06 55.1 76 39.5


User provided reference genes

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