Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 0.0e+00 1595.1 805 100.0
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 0.0e+00 1081.2 823 66.0
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 7.4e-307 1057.0 834 65.5
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.4e-302 1042.7 807 65.2
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.7e-301 1038.5 811 63.6
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.5e-299 1032.7 878 61.4
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.1e-297 1026.5 808 63.7
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 1.3e-295 1019.6 836 62.9
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 6.0e-293 1010.7 809 63.2
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 1.0e-292 1010.0 773 66.0
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.0e-287 993.4 829 63.2
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.3e-282 976.5 813 60.8
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 6.3e-282 974.2 808 62.3
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 2.7e-277 958.7 754 64.2
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 4.6e-277 958.0 794 61.5
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 3.1e-273 945.3 777 62.7
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.3e-271 939.9 796 60.3
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 9.4e-270 933.7 785 59.4
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 7.4e-267 924.1 835 57.8
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 1.1e-265 920.2 767 61.4
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 7.0e-265 917.5 774 59.9
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 3.5e-264 915.2 813 57.7
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.1e-262 910.2 774 59.8
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 2.5e-262 909.1 765 59.7
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.2e-261 906.7 772 60.5
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 8.0e-261 904.0 765 59.2
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.2e-259 900.2 946 53.2
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 9.7e-259 897.1 827 57.1
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 4.7e-253 878.2 865 54.1
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 7.5e-251 870.9 836 55.6
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 5.9e-248 861.3 812 56.0
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 8.5e-247 857.4 746 58.2
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.1e-246 857.1 745 58.7
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 4.0e-244 848.6 794 56.2
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 4.4e-243 845.1 762 55.1
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 9.8e-243 844.0 786 56.0
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.1e-241 839.0 767 58.3
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 4.1e-241 838.6 903 50.7
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 5.9e-240 834.7 809 54.0
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 2.3e-239 832.8 828 53.5
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 5.0e-239 831.6 822 53.0
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.1e-238 830.5 785 55.0
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 3.3e-238 828.9 785 54.9
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 9.5e-238 827.4 827 53.7
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.8e-237 825.9 763 55.3
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 4.7e-237 825.1 736 59.0
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 6.1e-237 824.7 835 54.1
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.4e-236 823.5 817 53.2
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 5.2e-236 821.6 824 54.1
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.4e-233 812.8 866 51.5
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 4.1e-233 812.0 769 55.4
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.0e-231 807.4 832 53.0
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.3e-231 807.0 824 52.5
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 3.0e-231 805.8 767 54.6
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 1.1e-230 803.9 766 54.6
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 9.5e-230 800.8 761 54.9
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 4.7e-229 798.5 777 53.8
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 2.3e-228 796.2 839 51.1
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.1e-228 795.8 630 64.8
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 5.8e-227 791.6 766 53.9
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 5.8e-227 791.6 812 52.0
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 2.9e-226 789.3 814 52.7
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 1.1e-225 787.3 819 53.0
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 2.4e-225 786.2 857 50.8
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 3.2e-225 785.8 792 52.0
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 3.2e-225 785.8 792 52.0
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.1e-222 777.3 816 52.6
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 4.3e-222 775.4 795 50.7
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 9.5e-222 774.2 833 51.7
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.2e-219 767.3 740 53.5
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 1.2e-216 757.3 867 49.4
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 6.0e-216 755.0 747 52.1
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 3.9e-215 752.3 712 54.8
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 6.6e-215 751.5 752 51.9
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.8e-212 743.4 794 51.6
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 3.8e-210 735.7 868 47.8
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.1e-205 719.9 816 48.2
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 4.0e-204 715.7 827 48.9
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 2.0e-203 713.4 866 48.0
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 3.0e-199 699.5 830 44.7
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 3.1e-196 689.5 578 59.9
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 5.3e-196 688.7 866 46.3
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 4.6e-192 675.6 658 54.7
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.3e-191 674.1 594 58.1
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 8.1e-189 664.8 895 42.2
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.1e-188 664.5 644 56.7
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 2.4e-185 653.3 763 48.1
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 4.2e-185 652.5 691 52.1
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 3.0e-183 646.4 578 56.7
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.8e-175 620.5 779 44.2
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 5.3e-172 609.0 625 52.5
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 3.6e-168 596.3 614 51.5
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 5.7e-158 562.4 784 40.2
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 3.2e-153 546.6 542 53.1
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.6e-139 501.1 603 46.9
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 8.0e-136 488.8 542 48.9
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 2.4e-124 450.7 727 40.4
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 6.1e-120 436.0 489 48.5
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 3.7e-117 426.8 350 61.4
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 1.7e-77 295.0 254 59.4
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 1.7e-77 295.0 373 46.4
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 6.7e-74 283.1 536 37.5
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.1e-73 282.3 333 46.8
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 2.7e-59 234.6 196 60.7
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 2.6e-54 218.0 170 65.3
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 3.2e-52 211.1 720 24.9
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 2.4e-47 194.9 703 24.8
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.3e-45 189.1 168 58.9
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.3e-45 189.1 147 67.3
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.3e-45 189.1 147 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 8.5e-45 186.4 450 29.6
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 4.8e-40 170.6 150 55.3
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 2.5e-36 158.3 594 24.2
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 4.7e-35 154.1 636 21.9
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 8.0e-35 153.3 570 23.9
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 8.0e-35 153.3 570 23.9
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 5.0e-29 134.0 123 55.3
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 3.0e-26 124.8 118 50.0
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 2.9e-21 108.2 86 57.0
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 8.5e-21 106.7 86 55.8
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 1.5e-12 79.3 71 59.2
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 4.2e-12 77.8 79 49.4
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 7.2e-12 77.0 78 52.6
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 4.7e-11 74.3 78 47.4
HanXRQChr16g0531501 Helianthus annuus HOM05D000001 ORTHO05D000003 2.0e-09 68.9 345 20.3
CsaV3_7G008820 Cucumis sativus L. HOM05D000001 ORTHO05D000003 9.8e-09 66.6 417 21.6
Gohir.D07G037600 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.8e-07 62.4 408 20.3
Rhsim02G0218100 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.8e-07 62.4 383 20.4
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 2.4e-07 62.0 159 26.4
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 2.4e-07 62.0 145 29.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 3.2e-07 61.6 145 29.0
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 3.2e-07 61.6 145 29.0
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 5.4e-07 60.8 159 27.0
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 9.2e-07 60.1 145 26.9
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.2e-06 59.7 145 29.0
AUR62009432 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.2e-06 59.7 409 20.8
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 1.2e-06 59.7 145 27.6
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 1.2e-06 59.7 145 27.6
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.2e-06 59.7 145 26.2
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 2.0e-06 58.9 180 26.1
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.7e-06 58.5 145 28.3
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 2.7e-06 58.5 141 29.1
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 3.5e-06 58.2 149 28.9
Eucgr.I02086 Eucalyptus grandis HOM05D000001 ORTHO05D000003 3.5e-06 58.2 418 20.3
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 4.5e-06 57.8 159 27.0
CDE07G0667 Ceratophyllum demersum HOM05D001587 ORTHO05D002654 7.8e-06 57.0 154 24.0
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 7.8e-06 57.0 148 26.4
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 7.8e-06 57.0 141 27.7


User provided reference genes

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