Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 0.0e+00 1080.5 629 100.0
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 5.7e-198 694.9 587 64.4
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 2.6e-190 669.5 606 62.9
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 7.0e-188 661.4 586 61.8
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 4.6e-187 658.7 631 58.5
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.4e-183 647.1 655 58.5
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.2e-179 634.0 603 60.7
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 4.6e-179 632.1 607 57.3
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.0e-178 628.6 603 60.4
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 3.6e-176 622.5 607 57.8
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 7.5e-174 614.8 583 57.8
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 4.4e-166 589.0 588 60.5
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 4.9e-165 585.5 670 52.2
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.4e-165 585.1 590 60.0
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 7.1e-164 581.6 689 52.1
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.2e-163 580.9 670 51.8
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 3.6e-160 569.3 635 52.3
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.1e-159 567.8 642 55.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 3.1e-159 566.2 617 52.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 2.6e-158 563.1 633 52.1
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 4.4e-158 562.4 643 58.8
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 3.2e-156 556.2 614 57.8
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 3.2e-156 556.2 671 49.2
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 5.4e-156 555.4 535 57.0
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 1.2e-155 554.3 587 55.9
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 1.7e-154 550.4 588 53.2
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 5.8e-150 535.4 639 50.5
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 7.6e-150 535.0 664 47.1
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.3e-149 534.3 581 52.8
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.3e-149 534.3 581 52.8
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.3e-149 534.3 681 48.3
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 6.4e-149 531.9 670 48.7
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.4e-148 530.8 610 51.0
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 2.4e-148 530.0 627 49.9
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.4e-148 530.0 670 48.7
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.2e-148 529.6 621 50.2
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 2.1e-147 526.9 620 51.0
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.0e-146 524.6 610 50.5
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.3e-146 524.2 670 47.5
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 3.0e-146 523.1 625 50.9
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 8.7e-146 521.5 623 51.0
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 1.5e-145 520.8 660 52.6
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 3.3e-145 519.6 669 50.4
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 5.6e-145 518.8 596 54.2
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.6e-144 517.3 657 46.7
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.6e-144 517.3 727 44.3
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 3.7e-144 516.2 626 49.8
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 3.7e-144 516.2 700 47.0
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 3.7e-144 516.2 652 46.5
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 5.3e-143 512.3 634 52.7
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 6.4e-141 505.4 567 51.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 5.5e-140 502.3 668 54.0
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.7e-139 500.0 643 47.1
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 3.5e-139 499.6 686 44.6
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.0e-138 498.0 589 49.2
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 2.3e-138 496.9 649 45.8
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.1e-137 494.6 670 47.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 1.5e-137 494.2 697 49.9
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.5e-137 493.4 707 43.0
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.4e-137 491.9 623 48.8
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 2.1e-136 490.3 566 53.9
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 6.2e-136 488.8 638 48.3
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 8.2e-136 488.4 762 41.2
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.8e-135 487.3 584 49.7
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.0e-134 483.8 739 42.9
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.4e-134 483.0 589 49.9
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 3.8e-133 479.6 685 45.7
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.5e-132 476.9 605 48.1
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 5.5e-132 475.7 722 48.1
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-131 474.2 700 48.7
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.8e-130 470.7 584 47.4
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 3.0e-130 469.9 708 46.5
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 6.7e-130 468.8 558 48.4
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.1e-129 468.0 617 45.9
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 4.1e-127 459.5 628 45.7
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 4.1e-127 459.5 745 43.8
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 9.0e-127 458.4 622 46.0
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.2e-126 458.0 756 43.3
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.3e-125 454.5 593 46.0
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 2.2e-125 453.8 546 47.8
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 5.0e-125 452.6 909 36.0
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.0e-125 452.6 598 44.1
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 7.2e-124 448.7 593 45.2
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 2.7e-123 446.8 593 45.9
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.8e-122 444.1 594 45.1
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.8e-122 444.1 634 42.4
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.5e-121 441.0 626 45.7
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.3e-120 438.0 489 53.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.0e-118 430.6 547 46.4
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 5.9e-118 429.1 634 43.1
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 1.3e-117 427.9 627 42.9
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 3.8e-117 426.4 442 56.8
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.1e-116 424.9 632 42.4
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.1e-107 394.0 290 71.4
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 6.7e-106 389.0 689 43.8
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.4e-103 381.3 528 43.8
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 3.5e-102 376.7 868 37.2
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 8.5e-101 372.1 566 41.9
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.9e-100 370.9 453 49.2
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.6e-99 367.9 455 49.2
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 6.1e-91 339.3 240 73.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 4.8e-88 329.7 202 79.2
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 6.1e-83 312.8 320 54.7
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 9.2e-71 272.3 240 62.5
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 9.2e-71 272.3 514 34.8
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 3.0e-69 267.3 673 32.7
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.5e-68 265.0 514 34.0
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.2e-67 261.9 744 31.2
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 8.9e-66 255.8 554 34.3
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.0e-65 254.6 181 70.7
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 4.4e-65 253.4 181 68.0
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.3e-64 251.9 513 33.7
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 5.0e-61 240.0 197 63.5
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.1e-53 213.4 146 74.0
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 8.1e-51 206.1 197 57.9
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.7e-48 198.4 177 57.6
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 8.4e-48 196.1 241 50.6
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 2.0e-41 174.9 198 45.5
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-33 146.0 145 55.9
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.8e-29 135.2 100 67.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 5.1e-29 133.7 198 39.9
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.5e-28 131.3 229 36.2
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 4.8e-27 127.1 216 38.4
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 6.9e-26 123.2 203 37.9
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 6.9e-26 123.2 203 37.9
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-23 115.2 333 30.9
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 4.3e-20 104.0 80 61.2
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-19 102.1 157 38.2
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 4.8e-19 100.5 144 40.3
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.5e-17 95.5 68 67.6
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 7.6e-17 93.2 134 44.0
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 8.7e-13 79.7 48 75.0
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 9.7e-12 76.3 107 42.1
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 5.3e-10 70.5 103 40.8
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 1.5e-09 68.9 143 34.3
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-09 68.9 49 63.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.6e-09 68.2 159 30.8
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 4.5e-09 67.4 77 39.0
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 5.9e-09 67.0 134 33.6
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.9e-09 67.0 59 54.2
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.3e-08 65.9 180 26.7
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 2.2e-08 65.1 56 57.1
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 6.5e-08 63.5 95 38.9
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-07 62.4 76 42.1
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.4e-07 62.4 126 34.9
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 3.2e-07 61.2 179 29.6
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 4.2e-07 60.8 183 31.7
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 5.5e-07 60.5 61 45.9
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 7.2e-07 60.1 160 31.2
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 2.1e-06 58.5 122 34.4
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 2.1e-06 58.5 203 27.1
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 2.7e-06 58.2 127 33.9
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 3.6e-06 57.8 124 33.9
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 4.6e-06 57.4 136 30.9
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 7.9e-06 56.6 122 29.5
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 7.9e-06 56.6 111 36.0
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 7.9e-06 56.6 111 36.0


User provided reference genes

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