Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 7.2e-288 993.4 577 100.0
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.8e-214 749.6 615 73.7
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.1e-207 726.1 566 77.0
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.5e-205 719.9 577 75.4
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.9e-204 715.7 578 69.9
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.4e-203 712.6 571 78.5
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 5.4e-203 711.4 572 76.4
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.2e-202 710.3 572 76.4
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.5e-200 702.6 569 75.9
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 3.8e-196 688.7 569 75.4
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.9e-196 688.3 570 72.6
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.4e-195 686.8 576 73.8
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 2.4e-195 686.0 579 72.5
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 4.2e-195 685.3 545 73.0
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.1e-194 682.9 556 76.8
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.0e-193 680.6 572 73.6
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.3e-193 680.2 577 73.5
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.8e-193 679.9 557 70.9
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.3e-192 675.2 573 71.4
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 7.4e-192 674.5 577 70.4
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 2.4e-190 669.5 574 69.9
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 4.0e-190 668.7 572 69.9
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 9.0e-190 667.5 611 69.1
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.2e-189 667.2 570 70.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 4.5e-189 665.2 575 68.0
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 1.3e-188 663.7 575 72.7
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 2.2e-188 662.9 570 69.6
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 2.9e-188 662.5 569 68.0
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 2.9e-188 662.5 570 73.5
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 3.8e-188 662.1 569 73.1
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 5.5e-187 658.3 571 68.3
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 7.1e-187 657.9 571 71.3
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 9.3e-187 657.5 571 71.6
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 9.3e-187 657.5 561 66.7
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 1.6e-186 656.8 579 72.5
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.7e-186 656.0 575 72.2
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 4.6e-186 655.2 578 70.1
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 6.0e-186 654.8 576 67.0
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.9e-186 654.4 577 71.9
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 7.9e-186 654.4 575 72.2
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.3e-185 652.9 577 71.6
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 2.3e-185 652.9 572 71.3
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.0e-185 652.5 575 72.2
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 5.1e-185 651.7 572 71.2
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.1e-184 650.6 577 71.4
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.9e-184 649.8 564 69.0
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.9e-184 649.8 578 73.4
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.9e-184 649.8 580 71.6
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.5e-184 649.4 578 69.4
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 4.3e-184 648.7 572 71.0
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 7.4e-184 647.9 556 70.1
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 9.6e-184 647.5 582 67.9
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.3e-183 647.1 578 69.7
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.3e-183 647.1 581 66.6
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.8e-183 646.0 569 71.4
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.8e-183 646.0 561 72.9
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 3.7e-183 645.6 571 71.8
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.1e-182 644.0 575 66.1
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 2.4e-182 642.9 569 67.7
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 3.1e-182 642.5 570 72.1
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.1e-182 642.5 562 68.5
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.9e-182 641.3 555 68.8
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 6.9e-182 641.3 555 68.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 6.9e-182 641.3 555 68.8
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.5e-181 640.2 555 68.8
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-181 640.2 555 68.8
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.5e-181 640.2 555 68.8
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.6e-181 639.4 557 72.5
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.5e-181 638.6 565 67.3
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 4.5e-181 638.6 573 68.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.8e-181 638.3 572 71.3
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.0e-180 637.5 562 68.0
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.5e-179 632.9 564 63.8
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.2e-178 630.6 564 67.7
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 2.1e-178 629.8 576 67.4
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 3.5e-178 629.0 576 72.6
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 4.6e-178 628.6 570 65.4
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 7.9e-178 627.9 570 70.7
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.8e-177 626.7 596 69.1
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 3.0e-177 625.9 565 66.9
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 3.0e-177 625.9 577 68.5
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 5.1e-177 625.2 578 65.9
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 5.1e-177 625.2 576 65.3
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 6.7e-177 624.8 577 68.8
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.7e-177 624.4 564 67.0
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 8.7e-177 624.4 562 66.7
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.1e-176 624.0 574 64.6
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.5e-176 623.6 575 65.2
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 9.7e-176 620.9 575 69.6
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 4.8e-175 618.6 558 69.0
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 8.2e-175 617.8 574 64.5
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.8e-174 616.7 573 64.2
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 3.1e-174 615.9 549 70.7
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 4.1e-174 615.5 570 69.8
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 9.0e-174 614.4 563 61.5
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 7.6e-173 611.3 575 69.2
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.0e-172 610.9 562 65.1
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.2e-171 604.7 574 59.1
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.7e-170 602.8 578 63.3
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.6e-170 602.4 562 64.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 8.8e-169 597.8 621 64.4
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.5e-168 597.0 533 72.8
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 3.8e-164 582.4 523 67.3
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 8.5e-164 581.3 562 66.9
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.2e-159 566.6 555 60.9
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.4e-158 563.9 562 64.4
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.4e-158 563.1 504 71.0
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.8e-153 547.0 560 59.8
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.3e-151 540.8 482 68.7
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.2e-151 540.0 568 60.9
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 8.8e-145 518.1 505 59.8
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 3.3e-144 516.2 574 63.8
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.5e-136 490.7 506 60.7
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 4.8e-135 485.7 557 52.1
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.4e-134 482.3 432 66.9
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.5e-131 474.2 629 56.4
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 5.5e-131 472.2 423 68.1
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 4.9e-127 459.1 568 46.5
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.4e-126 456.8 426 67.1
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 7.8e-125 451.8 555 46.1
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.2e-120 438.0 352 78.4
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.9e-118 430.6 422 63.3
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.9e-116 422.9 587 41.4
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.4e-110 402.5 252 81.0
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.1e-109 400.6 421 50.6
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.6e-108 395.6 542 43.0
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.3e-92 344.7 441 54.6
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.5e-88 331.3 476 46.4
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.4e-86 323.9 198 83.3
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.7e-85 320.5 220 84.5
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 9.6e-83 312.0 198 80.8
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.3e-71 275.0 289 64.4
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.7e-69 267.3 175 76.0
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.3e-68 264.2 246 74.4
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 3.7e-66 256.9 234 56.8
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.4e-65 255.0 199 66.8
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 9.0e-65 252.3 319 49.5
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 4.5e-64 250.0 172 72.7
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.9e-59 234.6 244 56.6
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.2e-55 221.1 138 78.3
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.0e-52 210.7 225 53.3
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 6.5e-47 193.0 204 52.5
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.4e-46 191.8 111 85.6
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.6e-45 188.3 288 54.2
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.3e-44 184.5 111 82.9
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 5.0e-39 166.8 84 92.9
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.1e-38 165.6 168 55.4
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-36 158.7 321 42.4
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.1e-33 149.1 608 25.3
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.5e-32 144.1 121 62.0
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.9e-30 138.3 100 73.0
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.2e-30 137.1 109 67.9
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.2e-30 136.3 93 76.3
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-29 135.2 131 50.4
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.1e-29 133.3 100 72.0
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.2e-23 114.8 573 25.5
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 6.1e-21 106.7 478 30.5
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 5.7e-19 100.1 80 67.5
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 3.1e-17 94.4 69 63.8
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 5.0e-15 87.0 158 36.7
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.5e-14 85.5 176 28.4
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.5e-14 84.7 66 68.2
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 4.2e-14 84.0 68 58.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 2.1e-13 81.6 62 61.3
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.0e-12 77.8 63 58.7
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 3.4e-11 74.3 64 54.7
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.3e-10 72.4 51 74.5
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-09 69.3 74 52.7
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 5.4e-09 67.0 73 46.6
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 5.9e-08 63.5 54 57.4
CAN.G664.4 Capsicum annuum HOM05D003766 ORTHO05D004607 7.8e-08 63.2 43 62.8
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.3e-07 62.4 52 55.8
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 3.9e-07 60.8 49 57.1
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 8.6e-07 59.7 68 52.9
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 8.6e-07 59.7 46 58.7
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.9e-06 58.5 76 44.7
AagrBONN_evm.TU.Sc2ySwM_228.2556 Anthoceros agrestis HOM05D022893 ORTHO05D016503 9.5e-06 56.2 112 30.4


User provided reference genes

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