Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.4e-228 795.8 375 100.0
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.7e-197 692.6 375 85.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 5.3e-191 671.0 374 83.2
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.5e-190 669.5 371 82.7
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 5.8e-190 667.5 375 81.3
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.7e-189 666.0 373 81.5
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 6.5e-189 664.1 373 81.8
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.4e-188 662.9 372 81.7
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 9.3e-188 660.2 373 81.5
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 9.3e-188 660.2 373 82.0
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 9.3e-188 660.2 371 81.9
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.2e-187 659.8 373 80.4
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-187 659.1 373 80.4
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 3.5e-187 658.3 373 79.9
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 4.6e-187 657.9 373 81.0
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.0e-186 655.2 374 80.2
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.5e-185 652.1 383 79.4
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 4.3e-185 651.4 372 80.4
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 7.4e-185 650.6 372 80.6
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.3e-184 649.8 373 79.6
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.6e-184 649.4 373 79.6
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.2e-184 649.0 373 79.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 3.7e-184 648.3 372 79.3
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 3.7e-184 648.3 373 79.9
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.8e-184 647.9 373 79.9
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 6.3e-184 647.5 371 81.1
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 8.2e-184 647.1 372 79.6
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.1e-183 646.7 373 81.5
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.1e-183 646.7 372 80.1
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.4e-183 645.6 371 79.0
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 3.1e-183 645.2 373 78.6
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 4.1e-183 644.8 373 78.0
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.5e-182 642.9 372 78.8
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 2.6e-182 642.1 372 78.5
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 2.6e-182 642.1 372 78.2
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 4.5e-182 641.3 372 77.7
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 7.7e-182 640.6 371 77.6
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 1.0e-181 640.2 371 77.6
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.7e-181 639.4 379 77.6
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 3.8e-181 638.3 372 78.0
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 8.5e-181 637.1 374 78.3
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 8.5e-181 637.1 373 76.9
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 1.1e-180 636.7 372 79.6
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.1e-180 636.7 372 77.4
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.4e-180 636.3 371 77.4
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.9e-180 636.0 373 78.6
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.9e-180 636.0 369 79.4
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.5e-180 635.6 373 79.1
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.5e-180 635.6 373 77.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 5.5e-180 634.4 372 78.0
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 7.2e-180 634.0 372 76.9
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 7.2e-180 634.0 366 79.2
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 9.4e-180 633.6 373 78.3
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 9.4e-180 633.6 372 79.0
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.2e-179 633.3 373 76.7
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 2.1e-179 632.5 374 76.7
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 3.6e-179 631.7 374 78.3
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 3.6e-179 631.7 371 77.1
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 4.6e-179 631.3 373 78.8
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 4.6e-179 631.3 373 76.1
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 6.1e-179 630.9 369 78.3
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 6.1e-179 630.9 372 76.9
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 7.9e-179 630.6 372 77.2
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.4e-178 629.8 380 76.1
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 1.4e-178 629.8 372 76.3
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 2.3e-178 629.0 373 75.1
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.0e-178 628.6 392 74.5
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 8.8e-178 627.1 372 75.8
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 4.3e-177 624.8 370 77.0
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.2e-176 622.5 373 75.6
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 4.8e-176 621.3 373 75.3
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 6.3e-176 620.9 371 75.7
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 4.1e-175 618.2 373 75.6
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 6.9e-175 617.5 372 75.0
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.6e-174 615.5 372 76.3
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 5.9e-174 614.4 370 75.4
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 7.7e-174 614.0 372 76.1
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 7.7e-174 614.0 369 75.9
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.3e-173 613.2 369 76.2
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 2.2e-173 612.5 366 76.5
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.8e-173 611.7 371 75.5
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 5.0e-173 611.3 370 76.2
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.9e-172 609.4 370 75.9
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 7.2e-172 607.4 370 75.4
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 7.2e-172 607.4 369 75.3
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 7.2e-172 607.4 356 78.1
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 9.4e-172 607.1 371 75.2
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.6e-171 606.3 371 75.7
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.1e-171 605.9 349 79.1
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 3.6e-171 605.1 371 75.5
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 4.7e-171 604.7 372 74.2
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 2.6e-169 599.0 372 73.7
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 4.4e-169 598.2 382 74.9
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.7e-169 597.8 370 72.2
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 9.7e-169 597.0 401 69.8
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 3.1e-167 592.0 372 76.1
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 9.1e-167 590.5 383 72.6
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.7e-165 586.3 318 84.6
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.2e-165 585.9 373 71.0
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 5.0e-165 584.7 403 69.7
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 6.5e-165 584.3 377 74.0
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.2e-164 582.0 458 63.1
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.0e-162 577.0 371 71.7
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 3.9e-162 575.1 420 66.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 5.2e-162 574.7 372 72.6
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.1e-161 573.5 374 69.8
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.7e-160 569.7 406 67.2
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.4e-159 566.6 371 69.0
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 6.1e-155 551.2 373 66.5
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 8.0e-155 550.8 373 70.5
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 3.0e-154 548.9 370 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 4.4e-153 545.0 374 66.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.7e-153 544.7 360 68.9
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.7e-152 543.1 371 66.8
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 2.7e-150 535.8 367 67.3
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.5e-148 530.0 308 80.2
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 4.0e-146 521.9 413 62.2
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.2e-138 495.0 293 75.1
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 2.2e-136 489.6 388 61.1
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.6e-134 483.4 372 62.9
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 7.0e-127 458.0 274 78.1
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.1e-111 407.5 385 53.8
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 3.0e-109 399.4 344 59.9
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.1e-98 364.4 216 76.9
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.4e-97 359.4 229 72.5
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.9e-96 356.3 249 68.7
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.5e-92 344.0 383 46.2
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.5e-92 343.2 220 73.2
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 8.1e-91 338.2 385 45.5
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 3.8e-88 329.3 403 44.9
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.6e-86 322.4 373 46.1
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-83 313.5 208 69.2
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.9e-80 303.1 164 80.5
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 3.7e-75 286.2 170 76.5
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.6e-65 253.4 171 71.3
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.2e-49 201.4 475 30.7
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 1.8e-45 187.6 94 87.2
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.2e-37 159.5 134 64.2
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 5.4e-34 149.4 98 70.4
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 1.6e-33 147.9 98 69.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 7.2e-31 139.0 84 77.4
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 9.1e-26 122.1 92 66.3
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 8.6e-24 115.5 339 27.1
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.8e-18 97.8 163 37.4
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 3.9e-16 90.1 49 87.8
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 1.2e-14 85.1 47 80.9
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.1e-14 84.3 43 86.0
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 4.0e-13 80.1 46 73.9
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 4.4e-12 76.6 41 85.4
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 3.0e-08 63.9 30 73.3
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 6.6e-08 62.8 29 82.8


User provided reference genes

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