Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 4109.3 2084 100.0
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2640.5 2282 61.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2584.3 2227 61.1
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2567.0 2235 61.1
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2513.0 2167 62.2
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2485.3 2213 59.0
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2484.9 2185 60.9
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2471.8 2239 58.7
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2469.9 2245 58.9
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2452.9 2280 58.2
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2421.7 2216 58.2
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2417.1 2235 57.7
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2395.5 2134 58.8
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2393.2 2275 57.3
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2375.9 2275 57.0
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2358.2 2211 57.2
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2355.1 2271 56.7
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2351.6 2211 57.0
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2349.3 2335 55.3
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2329.3 2119 58.7
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2319.3 2085 59.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2314.3 2236 56.3
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2305.0 2131 57.7
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2289.2 2336 53.8
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2288.1 2814 47.9
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2284.6 1970 62.3
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2283.1 2238 55.8
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2258.0 2210 55.6
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2242.2 2091 55.7
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2233.0 2096 58.0
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2232.2 2223 55.0
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2230.7 2128 55.5
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2225.7 2083 55.9
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2225.7 2191 54.9
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2203.3 2127 55.1
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2188.3 2226 53.8
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2183.7 2328 53.0
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2174.4 2110 54.6
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2155.2 2202 52.7
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 2152.1 2222 53.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2149.8 2100 55.5
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2146.3 2098 54.3
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2145.5 2066 55.5
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2144.0 2096 55.8
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2138.6 2255 52.5
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2132.8 2086 54.4
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2100.5 2107 53.6
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2093.9 2157 53.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2087.8 2234 52.1
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2077.8 2132 52.4
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2070.0 2204 50.5
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 2060.0 2201 50.8
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2056.2 2101 52.4
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2051.2 2183 50.8
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2043.5 2073 52.3
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2041.2 2041 54.4
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2034.6 2067 52.2
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2032.7 2057 53.5
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2030.4 2158 51.7
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2026.9 2214 50.7
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2016.9 2084 51.8
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2016.9 2084 51.8
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2013.4 2259 49.8
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2011.1 2084 51.8
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2009.6 2095 52.0
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1993.4 2074 51.6
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1985.3 2102 52.5
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1978.8 1731 59.4
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1960.7 2084 51.0
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1942.9 2019 52.6
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1934.8 2088 51.6
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1934.1 1805 55.9
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1914.0 2111 49.8
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1818.1 1307 70.6
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1764.2 1387 65.3
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1718.0 1465 59.3
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1700.3 1679 54.0
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1690.6 1344 64.3
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1689.9 1362 62.8
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1634.8 2093 44.1
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1611.7 1231 67.6
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1608.2 1589 54.5
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1604.7 1668 51.4
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1599.3 1779 48.7
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1562.7 1747 48.7
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1505.0 1368 57.1
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1437.2 1219 60.4
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1289.2 1879 41.6
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1213.0 2217 36.1
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1186.8 1411 48.2
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1161.4 1878 37.9
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 0.0e+00 1113.2 1891 37.2
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 0.0e+00 1080.5 1274 49.5
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.9e-310 1069.7 1105 51.9
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.5e-303 1047.3 1323 44.4
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.4e-269 934.5 608 75.8
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.1e-248 865.1 1406 41.1
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 5.1e-227 793.1 669 61.3
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 8.9e-179 632.9 888 42.6
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.3e-155 555.1 465 61.9
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 6.4e-145 520.4 882 38.9
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 2.4e-139 501.9 734 41.1
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 8.4e-137 493.4 954 34.4
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 8.1e-132 476.9 683 42.5
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.1e-131 474.9 837 37.8
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 4.0e-131 474.6 741 39.3
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 1.5e-117 429.5 464 47.8
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.3e-110 406.4 827 33.7
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 1.8e-102 379.4 499 46.5
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.3e-102 379.0 348 60.6
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 1.4e-99 369.8 231 77.5
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.8e-84 318.9 379 51.2
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 4.1e-83 315.1 236 66.5
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 2.9e-73 282.3 442 41.0
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 5.4e-67 261.5 241 60.2
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.3e-64 251.9 220 58.2
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 2.1e-55 223.0 150 74.0
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.2e-53 217.2 146 71.9
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.5e-53 216.9 153 69.9
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 2.0e-53 216.5 152 70.4
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.1e-51 210.7 105 100.0
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 1.2e-47 197.2 414 34.1
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 5.4e-43 181.8 186 55.9
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-40 174.1 621 26.1
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 4.3e-40 172.2 402 33.1
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 2.5e-32 146.4 209 41.1
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.8e-31 142.9 351 31.6
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 3.4e-29 136.0 98 66.3
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 3.2e-27 129.4 199 36.7
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 3.5e-26 125.9 124 51.6
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.0e-25 124.4 64 96.9
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 3.6e-23 115.9 73 74.0
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-17 96.3 252 27.8
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 3.9e-17 95.9 73 67.1
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 3.9e-17 95.9 206 31.1
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 4.3e-16 92.4 119 46.2
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 2.1e-15 90.1 102 45.1
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 3.7e-15 89.4 158 35.4
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.6e-13 83.2 144 35.4
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.1e-11 77.8 144 34.0
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 1.4e-11 77.4 78 55.1
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 1.9e-11 77.0 787 21.0
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 1.6e-10 73.9 52 71.2
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 7.9e-10 71.6 649 19.3
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.8e-09 70.5 477 21.8
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 8.7e-09 68.2 531 20.2
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.5e-08 67.4 493 21.7
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 2.5e-08 66.6 513 20.9
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 2.5e-08 66.6 416 21.4
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 7.4e-08 65.1 621 20.9
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 2.8e-07 63.2 38 71.1
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 2.8e-07 63.2 507 19.7
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 4.8e-07 62.4 251 23.9
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 1.4e-06 60.8 251 23.5


User provided reference genes

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